Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376453
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Entry
139376453 CDS
T10872
Name
(RefSeq) leucine-rich repeat-containing protein 4B-like
KO
K16360
netrin-G3 ligand
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
139376453
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139376453
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
NGL family
139376453
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_9
ig
LRR_14
V-set
Ig_2
LRR_NXF1-5
LRRNT
DUF7617
Pam3_Gp34
Motif
Other DBs
NCBI-GeneID:
139376453
NCBI-ProteinID:
XP_070975169
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Position
20:complement(48859619..48865444)
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AA seq
749 aa
AA seq
DB search
MHVVMMTSPSTPSPFLWLVQLLLWLHHHGPQLTEAVPPCPNPCSCSNQASRVICTRKSLE
DVPDSISVNTRYLNLQENTIQVIKSDTFKHLRHLEILQLSKNHIRQIEVGAFNGLPNLNT
LELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPAYAFHRVPSLRRLDLGELRKLDYI
SEAAFEGLVNLRFLNLGMCGLKDIPNLTPLVRLEELELSGNQLGIVRPGSFQGLVSLRKL
WLMHSKVTVIERNAFDDLKNLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWVCNCD
VLWLSWWLKETVPSNTTCCARCHAPPVLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTEG
MAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMV
TNSAGNTTATAVLNVSSSDSSNPYSFFTTVTVETVETNNGEDAGRQYINETYVPPDYLGP
TFSGGVLGKGRAGFTISPSRSSLHSFSPRATRNTENTVTVSIMDVTNITGLDDVMKTTKI
IIGCFVAITFMAAVMLVVFYKLRKQHQLHKHHGPTRAIEIINVEDEIGAGAGISGGSTMQ
SGCGGDGTLRMHHPEIVNLPNIGRSEHLNHYYKANHFNNNVMGLSIGTGAGVGTLSNKNN
LSPLNQQCQDIPISCTQVPIPSATFQTMSGNGTNTNPLSVSPPLPMSLPMPPMGLHGSIK
GFMGQNQNPQMEPLLFKGNSKENVQETQI
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgcatgttgtcatgatgaccagcccctccaccccctcccccttcctctggttggtccag
cttttgctgtggcttcaccaccatggacctcagctgacagaggccgtacccccatgtccc
aacccctgtagctgctccaatcaggcaagccgcgtcatctgtacaaggaagagtttagag
gacgtaccggacagtatatctgtgaacacaagatacctcaacttacaagagaacacgatt
caggtgataaagtcagacacgttcaagcacctgcggcatttggaaatactgcagctctcc
aaaaatcacatccgacagattgaggtgggcgcgttcaatggcctgccaaacctcaacacc
cttgagctctttgacaatcgcctcacgctggtaccatcgcaggcctttgagtacctcagc
aagctgcgggagctctggctacggaacaaccccatcgagacactgccagcgtacgccttt
caccgcgttccctccctgcgccggcttgacctgggcgaactcagaaagctggactacatc
tctgaggccgcctttgagggcctggtcaacttgcgcttcctgaacctgggcatgtgcggc
ctgaaggacatccccaacctcacacccttggtcagactggaggagctagagctgtcagga
aaccagctggggatcgtcaggccgggctccttccagggcctggtgtcactgcgcaagctg
tggctcatgcactccaaggtgacggtcattgagcgcaatgccttcgacgacctgaagaac
ctggaggagctcaacctgtcccacaactctctgcattcactgccccacgacctcttcacc
ccgctgcaccagttggagcgggtgcacctcaaccacaacccctgggtgtgcaactgcgat
gtcctgtggctcagttggtggctcaaggagacagtgcccagtaacaccacatgctgtgcc
cgttgccacgcgcccccagtcctgaagggccgctacatcggtgagctggaccagagccac
ttcacatgctacgctcccgtcattgtagagccacccaccgacctcaatgtcacagagggt
atggccgcggagctgaagtgtcgcactggcacctccatgacgtctgtcaactggctcacc
ccaaatggcaccctcatgacccatggatcgtaccgcgtcaggatctcagtccttcacgac
ggaaccctgaatttcaccaacgttactgtgcaggacacgggccaatacacctgcatggtg
accaactccgcaggcaacaccacggcgactgcagtgctcaacgtgtcctcctccgactcc
agcaacccctacagcttcttcaccaccgtcactgttgaaaccgtggaaacaaacaatggt
gaggatgctgggaggcagtacatcaacgaaacctacgtaccaccagattacctgggtccc
actttttcaggaggggtactgggtaaaggcagggctggattcaccatatctccatctcgc
tcttctctccactctttctccccgcgtgccaccagaaacactgaaaatacagtcacagtg
tcgataatggatgtcacaaacattactggcctggacgatgtgatgaagaccaccaagatc
atcattggctgctttgtggccatcaccttcatggcagccgtgatgcttgtggtcttctac
aagctgaggaagcagcaccagctgcacaagcaccatggccccacccgcgctattgagatc
atcaacgtggaagacgagattggtgccggggccggcatctcagggggatcgaccatgcaa
tctgggtgcggaggagacggaacattgaggatgcatcacccggaaatagtcaaccttccc
aacattgggcgatcagagcatcttaaccattactacaaggccaatcatttcaacaacaat
gtgatgggtctgagcattgggacaggggcaggagtcggtactctaagcaacaagaacaat
ctgtctccacttaaccagcaatgccaggatatcccaatctcctgtacacaggttccaatc
ccctccgccactttccagaccatgtctggaaatggcaccaacaccaaccctctttctgtt
tccccacctctgccaatgtccctccccatgccccccatgggattacatggatcgatcaag
ggtttcatgggccagaaccagaacccacaaatggaacctcttctgttcaagggaaactca
aaggaaaacgttcaagagactcaaatttga
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