Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376585
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Entry
139376585 CDS
T10872
Name
(RefSeq) neurexin-1a-like isoform X1
KO
K07377
neurexin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
139376585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139376585
Membrane trafficking [BR:
ocla04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
139376585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_G_3
EGF
Syndecan
Motif
Other DBs
NCBI-GeneID:
139376585
NCBI-ProteinID:
XP_070975439
LinkDB
All DBs
Position
20:58201598..58280519
Genome browser
AA seq
1497 aa
AA seq
DB search
MCLRVCVMAVCVWAAAPLLCVWLCLCSLGGSRGEVLEFGGVSGQWGRFPVWNACCESILS
FSVRTHSEDGLLLYLDDEGFCDFLELLLLRGKLRLRFSIFCAEPAEVSSGVAVSDGHWHV
VRVKRDWRNTSLEVDGRMEGWAEVKSKRRDMTVFSHTFMGGVSPELHASPLRLTSPGVRD
HAPFAGWLTSVTINGSAVVMEGSEGVTMGGDGCGPDHMCQNGGVCSVVEQKNVCDCTDTG
YKGNDCSEEHYNPGLAHLMIGDQAREDYLATFKGSEYFCYDLSPSPIQSSSDEITLSFKT
LQRNGLMLHTGKSADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTR
NLRQHSGIGHAMVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNF
MGCLKEVVYKNNDVRLELSRLAKQGDAKMKVSGMVAFKCESVATLDPVTFDTPESFVALS
KWSAKKAGSISFDFRTTEPNGLMLFSHGKPRQQQRKDPRTPPILKVDFFAIEMLDGHLYL
LLDMGSGTTKTKAIDRKVNDGEWYHVDFQRDGRSGTISVNSQRTAYTAPGDSEILDLDDT
LYLGGLPEDRQGLIFPTEVWTALLNYGYVGCVRDLFVDGQSKDIRRLAEVQRAVGVKPSC
SREPPKQCLSNPCQHSATCREGWNRYVCDCSGTGYLGRACERDATILSYDGSKFMKVQLP
VAMHTEAEDVSLRFRSQRAYGVLMATTSRNSADTLRLELDGGRVRLTVNLDCIRINCTAS
KGPETIFAGVGLNDNEWHTVRVVRRGKSLKLTVDDLQPVEGQMAGDHTQLEFHNVETGIV
TEKRFMPAVPSNFIGHLQGLTLNGMPYIDLCKNGDIDYCELNAVIGYKSIVADPVTFRSR
SSYVTLPTLQAYYSMHLFLQFKTTSPDGLVLYNRGDGNDFIVVELVKGYLHYVSDLGNGA
HLIKGNSNSPLNDNHWHNVLISRDTNNLHTVKIDTKVTTQTTMGAKNLDLKGDLYVGGVA
KEMYRDLPKLVHSREGFQGCLATVDLNGRLPDLLADALATTGQVERGCEVALMKADLQGP
STTCQEDSCSNQGVCLQQWEGFSCDCSMTSFGGPLCNDAGTTYIFGRDGGVIVYTWPPNE
RPSTRADRLALGFSTQQKHATLLRVDSASGLGDYLQLQIDKGNIRVVFNVGTDDINIEET
AKSVNDGKYHIVRFTRSGGNATLQLDDLPIIERYPSGNIDNERLAIARQRIPYRLGRVVD
DWLFDKGRQLTIFNSQTTVTVGRGKEAGQFQGQMAGLYYNGLKILNMAAEGHAHIRLEGS
TRLVGDMPSSITPQSSAAAGANRSDPAANAGDITTTTATNRKQGGGATQQSTDDLLVASA
ECPSDDEDIDPCDPSSAAHPPLPEVKPFPGTSEGVRESSSTTGMVVGIVAAAALCILILL
YAMYKYRNRDEGSYHVDESRNYISNSATQPNGSTKDKPLGIAKISKNKKNKDKEYYV
NT seq
4494 nt
NT seq
+upstream
nt +downstream
nt
atgtgtttgcgcgtgtgtgtgatggcggtgtgtgtgtgggccgcggcccccctgctgtgt
gtctggctgtgcctctgtagccttgggggatccagaggggaggtgctagagtttgggggg
gtgtcgggacagtgggggcggttcccggtgtggaacgcgtgctgcgagagcatcctgtcg
ttcagcgttagaactcacagtgaggacggactgctgctttaccttgacgacgaaggattc
tgcgacttcctggaactattgttgctgcgcgggaaactccgcctacgcttctccatcttc
tgcgccgagccggctgaggtgagttccggggtcgccgtgagtgacggacactggcatgtg
gttcgtgtgaaacgggactggaggaacacaagccttgaggtggatggaaggatggaggga
tgggcagaggtgaagagcaaacggagagacatgacagtgtttagccacacctttatgggc
ggggtttccccagagctccacgcctcccctctccgcctcacttcccctggcgtcagagac
cacgccccctttgctggctggctcacttcggtgaccatcaatggatcggcggttgtaatg
gaaggatcggagggcgttaccatggggggagacgggtgtgggccggaccacatgtgtcag
aatggaggggtgtgttctgtcgtcgagcagaagaacgtttgcgactgtaccgacaccggc
tacaaaggcaacgactgcagcgaagaacactacaacccaggtctggctcacctgatgatc
ggcgaccaagcccgtgaggactacttagcaacatttaagggatcagagtatttctgctat
gacctgtctcccagccccatccagtcctccagcgatgagatcaccctgagctttaagacc
ctgcagaggaacggcctgatgctccacacaggaaagtcggctgactacgtcaacctggcc
ttaaagaacggagccgtgtcactggtcatcaacctggggtccggggctttcgaggccctg
gtggagccggttaacgggaagtttaacgataacgcatggcacgatgtcaaggtcacgcgc
aacctgagacagcactcaggcattggacacgctatggtgaccatatctgtggacggcatt
ctgaccactacgggctacacccaggaagactacaccatgttgggctcagacgatttcttc
tatgtgggaggaagtcccagtactgccgacctccctggatctcctgttagcaacaacttc
atgggctgcctcaaagaggtggtgtataagaacaatgatgtacggttggagctgtctcgg
ctggctaagcagggagatgctaagatgaaggtgagcggtatggtggcgtttaagtgtgag
agtgtggcgaccctcgatcctgtgacctttgacaccccagagtcgtttgtggcattaagc
aagtggagcgccaagaaggcagggtcaatctcctttgacttccgaacgacagaacccaac
ggactgatgctcttcagccacgggaaaccacgacagcagcagcgcaaagacccccgcaca
ccccccatcctaaaggtggatttctttgccatcgagatgctggatggtcacctgtatttg
ctgctggacatgggctcaggaaccaccaagaccaaggccatcgacaggaaggtcaatgat
ggggagtggtaccatgtcgacttccagagggacgggcgctcaggtactatctcagtgaat
tcacagcgtacagcgtacacagctccaggggacagtgagattctagacctggatgatact
ctgtacctaggaggattaccagaggatcgccaaggactcatcttccctactgaggtgtgg
acagcgttattgaactacggctatgtcggctgcgtgagagacctgtttgtggacggtcag
agtaaggacatccgtcgtctggctgaggttcagagggctgtaggggttaagccctcttgc
tccagagagcctcctaaacagtgtctgtccaacccctgccaacacagcgccacctgcagg
gagggctggaacagatacgtgtgtgactgctctgggaccggatacctgggacgggcctgt
gagagagatgcgaccatcctgtcctatgatggtagtaagtttatgaaggtccagttgccc
gtagcgatgcacactgaggcggaggacgtgtcgctacggtttcgctcccagcgggcctac
ggtgttctcatggcaacaacatcacggaactcagccgacacgctccgactggagctggat
gggggccgtgtccgtctcactgtcaacctagactgtatcaggattaactgtaccgccagt
aagggtccagagaccatctttgcgggggtggggctgaatgataatgagtggcacacggtc
agagtggtgcgtcgtgggaaaagcctcaaactcaccgtcgacgacctgcaacctgtagaa
ggtcagatggcaggcgaccacacccagctggagttccacaacgtggagacaggcattgtg
acggagaagcgcttcatgcccgctgtgccctccaacttcatagggcacctgcagggcctc
accctcaacgggatgccttacatagacctctgtaagaatggtgacatcgactattgcgaa
ctgaacgctgtgattggctataagagcatcgtggcggacccggtgacgttcaggtcacgg
tcgagctacgtgaccctgcccacgctccaggcctactactccatgcacctgttcctccag
ttcaaaaccacctcccctgacggactcgtactctacaacagaggagacggaaacgacttc
atagtggtggagctggtcaaaggctacctccactatgtgtccgacctggggaatggggca
cacctgatcaaagggaactccaactctcctctgaatgacaaccactggcacaatgtgctc
atatccagagacaccaacaacctgcacactgttaagatagataccaaggtcactacacag
accactatgggggccaagaacctggatctcaaaggtgacctgtacgtagggggggtggct
aaggagatgtatagggaccttcccaagctcgtccactcccgggaaggcttccagggttgc
ttagcaaccgttgaccttaacggccgactacccgacctgctggctgatgctctagctacc
accggacaagtagagaggggctgtgaagttgcattgatgaaagctgacttgcaaggtccc
agtactacctgtcaggaagactcttgctccaatcagggcgtgtgtttgcagcagtgggag
ggatttagctgtgattgcagtatgacgtcattcggaggaccgctctgcaatgacgcgggg
accacgtatatctttggtcgtgatgggggtgtgattgtgtacacctggcctcctaacgag
cgccccagtacacgggctgaccggctcgcgctgggcttcagcacacagcagaaacacgct
accctgctacgggtcgacagcgcctcgggactgggggactacctacagctacagatagat
aaaggaaatattagggtagtgtttaacgtggggacagatgacatcaacattgaagagact
gctaaatccgttaatgatgggaagtaccacatagttcggtttacccgcagcggaggcaac
gcaaccctgcagctggatgacctgccaatcatagagcgttacccctcaggcaacattgat
aacgagcgcctggccatcgctagacagagaatcccctatcgactcggtcgagtagttgac
gattggctattcgacaaaggccgccagctgaccatcttcaacagccagacgacggtgacg
gtgggaagaggaaaggaagcaggtcagttccagggtcagatggccggtctctactacaac
ggactgaagatactcaacatggccgccgaaggacacgcccacatccgcctggagggcagc
acgcgattggttggggacatgccctcctccatcacgccccaatccagcgctgccgccggg
gcaaaccgatcagaccccgccgccaatgccggcgacatcaccacgacaaccgccacaaac
aggaagcaaggaggaggagctacgcaacagtcgacagacgacctgctggtggcatcagct
gagtgtcccagtgatgacgaggacattgacccatgtgaccccagctctgcagcccacccc
cctctcccggaggtcaagccgttcccagggacatcagagggagtgagggagtccagcagc
accaccggcatggtggtgggcatcgtggcggccgccgccctctgcatcctcatcctgctc
tacgccatgtacaagtaccgcaaccgcgacgagggctcgtaccacgtggacgagagccgc
aactacatcagtaactctgccacccagcctaacggcagcaccaaggacaagccgctgggc
atcgccaagatctccaagaacaagaagaacaaagacaaggagtactacgtgtga
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