KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376794
Entry
139376794         CDS       T10872                                 
Name
(RefSeq) collagen, type I, alpha 1b
  KO
K06236  collagen type I alpha
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510  Focal adhesion
ocla04512  ECM-receptor interaction
ocla04518  Integrin signaling
ocla04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    139376794
   04518 Integrin signaling
    139376794
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    139376794
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    139376794
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:ocla00536]
    139376794
Glycosaminoglycan binding proteins [BR:ocla00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   139376794
SSDB
Motif
Pfam: Collagen COLFI VWC VWC2L_2nd
Other DBs
NCBI-GeneID: 139376794
NCBI-ProteinID: XP_070975824
LinkDB
Position
20:complement(68446916..68469458)
AA seq 1458 aa
MFSFVDIRLALLLSAAVLLARGQGEDDSGFGSCSLDGQQYNDKDVWKPEPCQICVCDSGT
VMCDEVICEDTTDCADPIIPDGECCPICPDDSESEDPQLPGSPQGPQGGDGPKGDDGPEG
VPGNDGVDGQPGLPGPPGPPGPPGLGGGVFSPQMHHGYDQKSSGGQAQMGQMGPMGPRGL
AGPPGNTGPPGHHGPPGEPGEPGGSGPMGERGAMGPHGKNGDNGEPGRSGRPGERGSAGP
QGGRGTPGTPGLPGIKGHRGFNGMDGAKGDGGPAGPKGEGGSPGSSGNSGAMGARGLPGE
RGRPGPAGSSGARGNDGNSGPAGSNGPTGPSGAPGFPGGAGAKGETGPQGGRGSDGPQGS
RGEPGNPGPAGAAGPSGAPGGDGQAGGKGSTGAAGISGAPGFPGTRGPAGPPGSGGGNGP
KGNHGEHGAQGPKGEPGVKGEPGSAGPGGPPGPSGEEGKRGARGEPGGAGGVGPPGERGM
PGMRGFPGSDGAAGGKGGPGERGANGPMGAQGATGEAGRPGEPGMPGSKGMTGSPGSPGP
DGKVGPAGVTGNDGRSGPPGSSGARGQPGVMGFPGPKGPGGDNGKPGERGEAGAVGGLGA
PGKDGDSGAPGPQGPAGSQGEKGEGGPAGPNGFQGLPGTQGATGEPGKAGEQGGPGEVGG
PGPSGSRGDRGFPGERGGIGSAGPAGPRGANGSPGNDGARGESGAAGAPGGMGAPGLQGM
PGERGSGGNSGAKGERGDGGPKGADGGPGKDGMRGMTGPIGPPGPTGAHGEKGEGGLGGP
PGPTGGRGSPGERGEHGAPGPAGFAGPPGADGQPGNKGETGNNGPKGEAGAPGPGGPVGA
PGPQGPAGNSGTKGTRGAPGSPGASGMPGPGGRVGPPGGSGAPGSAGPPGPAGKEGQRGG
RGETGNAGRPGEAGAAGPPGPSGASGAKGNDGPMGAPGTPGPGGIAGQRGIVGGPGGRGP
SGTAGIPGTAGEPGKQGPGGPVGERGSPGPMGPPGLSGAPGEAGREGSTGHDGVSGRDGP
PGPKGDRGENGNAGSPGAPGPPGAPGPSGASGKSGSRGESGPAGPAGPNGPAGGRGGLGP
AGARGDKGEAGEGGERGHKGHRGLNGMPGLPGPSGSPGESGPAGLNGPSGPRGPHGSSGS
TGKDGMNGLPGPIGPPGPRGRNGEMGAAGAPGSPGLPGPPGPAGGGFHVAPIYNQEKGPD
PMRGGGGYHYRADEPDMMNDRDMDVDTTLKSLSQKVENIRSPEGSQKNPARMCRDIRMCH
PEWKSGQYWVDPNQGSPLDAVQVYCNMETGETCVYPSQDTVPMKNWYTSKNIREKKHVWF
SESMDNGFQFQYGSEGSNPEDVNIQLTFMRLMSNEASQNVTYHCKNSIAYMDEATGNLKK
ALLLQGANEIEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMD
VGAPDQEFGVEVGPVCFV
NT seq 4377 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatattcggttagcgctgctgctcagcgcagcagtgctattggca
agaggtcaaggagaggacgatagcggattcggcagctgctcgttggacggccaacagtac
aacgataaggatgtatggaaaccagaaccctgccagatctgcgtctgcgacagcggaacc
gttatgtgcgacgaagtgatttgcgaggacacaaccgactgcgccgaccctatcatcccc
gacggcgaatgctgtcctatctgccccgatgactccgagagcgaggatccccagttacca
ggaagtcctcagggaccacagggaggtgatggccccaagggtgacgatggtcctgagggt
gttccaggtaacgatggcgtggatggccagcctggcctgcccggccccccaggcccccct
ggacctcctggccttggcggcggagtcttctctcctcagatgcaccatggttatgaccag
aaatccagcggtggccaggcccaaatgggacagatgggccctatggggccccgtggtctt
gctggcccaccaggcaacaccggtccccccggtcaccatggtccccctggcgagcccggt
gagcctggcggttctggtcccatgggtgaacgtggtgcaatgggcccccatggcaagaac
ggagataatggtgagcctggcaggtctggtcgccccggtgagcgtggctccgctggccct
cagggtgggcgtggaacccccggaactcctggcctccccggcatcaagggacacagaggt
ttcaacggtatggatggcgccaagggagacggtggcccagctggccctaagggagagggt
ggttcccctggatccagtggcaactccggtgctatgggtgcacgtggtcttcctggtgag
agaggtcgccctggacccgctggctcttctggtgctcgtggtaacgatggtaactctggt
cctgctggatctaatggacccactggcccatctggtgcccctggattccccggaggtgct
ggagctaaaggagagactggtcctcaaggaggacgtggctcagacggaccccaaggatct
cgtggagagcccggtaaccccggacccgctggtgctgctggaccctctggtgcccctgga
ggtgatggccaagcaggaggcaagggttccactggtgctgctggtatctctggtgctcct
ggtttcccaggaactcgtggccccgctggaccccctggatctggtggtggaaatggcccc
aagggtaaccatggtgagcacggagcccaaggccccaagggagagcccggtgtaaaggga
gagcctggttccgctggtcccggtggaccccctggaccctctggcgaggagggaaagaga
ggcgcccgtggtgagcccggtggagctggtggtgttggaccccctggagagcgtggtatg
cctggtatgcgtggtttccccggctctgatggagctgccggtggcaagggtggccctggt
gagcgtggagccaatggaccaatgggagcccaaggtgccactggtgaggctggtcgtcct
ggcgagcctggcatgcccggatccaagggtatgactggtagccctggtagccccggaccc
gatgggaaagttggtcctgctggtgtcactggaaacgacggtcgctccggacccccaggc
tcctcaggagccagaggtcagcctggagtcatgggattccccggacccaaaggacctggt
ggtgacaatggcaagcccggtgagagaggtgaagctggagctgttggtggtcttggtgct
cctggtaaagatggtgactctggtgctcctggaccccaagggcctgctggttctcaagga
gagaaaggagagggcggccccgccgggcctaatggattccaaggtctgcctggaactcag
ggagctactggtgagcctggcaaggctggtgagcagggtgggcccggtgaggttggaggt
cctggccccagtggatccagaggtgacagaggtttcccaggtgagcgtggtggcatcgga
tctgctggccccgctggaccccgtggagccaatggttctcccggtaacgatggagctagg
ggtgagagtggtgctgctggtgcccctggcggtatgggagccccaggtctgcagggaatg
cccggagagcgcggctcaggcggcaactctggtgccaagggagaacgaggtgatggtggc
ccaaagggagccgacggtggccctggaaaagacggcatgcgtggtatgactggacccatc
ggaccccctggacccactggtgctcatggagagaagggtgagggtggtctcggtggcccc
cctggccccactggaggtcgcggttcccctggtgagcgtggtgagcatggtgcccctgga
cctgctggattcgctggaccccctggtgctgatggtcagcctggcaacaagggagagacc
ggtaacaacggccccaagggtgaggctggtgctcccgggcccggtggacctgttggtgct
cccggacctcaggggcccgctggtaattctggtactaaaggaactcgtggtgcacctgga
tcccctggtgcttctggtatgcctggtcctggtgggagagtcggtcctcctggtggaagt
ggagcccccggatccgcaggccccccaggccccgctggtaaagagggacagagaggtgga
cgtggtgaaactggtaacgctggtcgccccggtgaggctggagccgccggacccccaggt
ccctcaggagcctctggagctaagggtaacgatggtccaatgggagccccaggaaccccc
ggacccggaggtattgctggacagcgtggtattgtgggtggccccggaggaaggggaccc
agcggtactgcaggaataccaggaacagctggagagcccggtaagcagggacctggcggc
cccgtcggtgagcgtggctcccctggccccatgggaccccctggcttgtctggtgcgccc
ggtgaagctggtcgtgagggttccactggtcacgatggtgtttctggccgcgatggaccc
cccggccccaagggtgaccgtggtgagaatggtaatgctggttcccctggtgctcccgga
cctcccggtgcccccggtccctctggtgcttctggcaagtctggtagccgtggagagtct
ggtcctgctggtcccgctggccctaacggtcctgctggtggtcgtggtggtcttggacct
gctggtgctcgtggagacaagggagaggctggagagggtggagagagaggccacaaggga
cacagaggtttgaacggcatgcccggtcttcctggaccctctggttcccctggtgagtct
gggcctgctggacttaacggaccttctggaccccgaggaccccatggttcttctggctcc
actggcaaagatggcatgaacggcctgcctggacccattggaccccccggaccccgtggt
cgcaacggagagatgggagcagctggtgctcctggttctcctggtctgcccggacctcca
ggtcccgctggtggcggcttccatgtcgcaccgatctacaaccaggagaagggacctgac
cccatgcgaggaggaggaggataccactaccgcgctgacgagcctgacatgatgaacgac
cgtgacatggatgtggacaccaccctgaagagcctcagccagaaggtggagaacatccgc
agccccgagggatcccagaagaaccccgcccgcatgtgccgtgacatcaggatgtgccac
cccgagtggaagagcggccagtactgggtggaccccaaccagggctctcctctggatgct
gtccaggtctactgcaacatggaaaccggagagacctgtgtctatccatcccaggatacc
gtccccatgaagaactggtacaccagcaagaacatcagggagaagaagcacgtctggttc
tcagagtctatggacaatggcttccagttccagtatggtagcgagggatccaacccagaa
gacgtcaacatccagctgaccttcatgcgcctgatgtccaacgaagcgtcccagaacgtc
acgtaccactgcaagaacagcattgcctacatggacgaggccacgggcaacctgaagaag
gccctgctgctccagggagccaacgagatcgagatcagagccgagggcaacagccgcttc
acatacagcgtcagcgaggacggctgcacgtcacatactggcacatggggcaagacagtc
atcgactacaagacatcaaaaacatctcgcctgcccatcattgacatcgctcctatggac
gttggtgcacctgatcaggagtttggcgtcgaagttggccccgtctgcttcgtataa

DBGET integrated database retrieval system