KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376804
Entry
139376804         CDS       T10872                                 
Name
(RefSeq) helicase-like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ocla04121]
    139376804
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139376804
Enzymes [BR:ocla01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     139376804
Ubiquitin system [BR:ocla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    139376804
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    139376804
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_3 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-RING_5 DEAD zf-C3HC4_4 ResIII zf-ANAPC11 RING_XB3-XBAT31 zf-rbx1 Prok-RING_4 zf-Nse DUF5817 zf-RING_6 zf-RING_4 Ribosomal_L15e
Other DBs
NCBI-GeneID: 139376804
NCBI-ProteinID: XP_070975838
LinkDB
Position
20:complement(68943387..68955073)
AA seq 970 aa
MQSRRWFGGAGFSFADDQVTETLSQAIRGTGEELDREPDTGVLFGSLRGSVVGLRYYTGV
VNKGEMVSLVRQPQNPYDCNAVMVANVYGSQVGHIKRELAVLLANIMDNNLARVEGVVPL
GVTNQFTMSVVLSFWGREENRDAVLRQITSRSFKLQSGPTDGSRGLPRKSVLLTAEELKN
AFDNLFENLMEDKIGEREAVEAVCTPLLPHQKQALSWMCVCENNAALPHFWEVKGELFYN
TLTHSSVRERPQRVRGGILADDMGLGKTLTTIALILSNFHHGKPLCEPEKSSPEPKASTT
ARKNPEGKSGDGDQAEVSVAPAGHSPCMRANQAETQVVCVESVDLVQEDVVEDGDEDWVS
EKKVKGRPQGGKAKATTTKKAAKTKGKAVSTSRKGGAVLEDLDFAAALSGLTKGAPQKKS
VGKSVVSPVEAASSQSTDDPAARATLIICPLSVLSNWLDQLDQHVRADVKLNVYLYYGSE
RNRDTHFLSSQHMVLTTYNVLSADYSGSASPLHTVSWLRVVLDEGHIIRNPNTQQSKAVL
KLNTQRRWILTGTPIQNNLRDLWMLVAFLRLKPFDVREWWNRVIQRPVTQGDKTGLQNLQ
ALVKCVTLRRTKTSRVCGRPLVSLPERSVRIEEVELTQKEREEYELARTEGRTTISRYVA
EGTVLRNYADVLAILVRLRQFCCHPGLLGKTTTHTGVVAVTPAELRERLIMKLRLVLGTG
SDEECAVCLDSVRLPVITHCAHVYCRPCIAEVIRSEQEQARCPLCRGQIKASELVEFPLE
EEEEESNLLENWRSSSKVEALMSSLLRLRSEDDSIRSLVVSQFTRFLTILEIPLREEGFK
FVRLDGTMSQKRRAQVIQEFQSDAPGSPLIMLLSLKAGGVGINLSAASRVFLMDPAWNPA
AEDQCVDRCHRLGQKRDVVITKFIVKGSVEENMVKIQRQKQDLVEKAFGTKNHSERKTSR
VDEIRALMEL
NT seq 2913 nt   +upstreamnt  +downstreamnt
atgcagtccaggcgatggtttggaggggctgggtttagctttgcagatgaccaggtcaca
gagacgttgtcccaggccatccgaggcacaggagaagagctggaccgagagccagacact
ggggtgctgtttggcagcctacgtgggagcgtggtaggcctccggtattatactggcgtg
gtgaacaaaggggagatggtgtctctggtgcgtcagcctcagaacccatacgactgtaat
gcggtgatggtggctaacgtctatggcagtcaggtggggcacatcaaacgagagctagcc
gtgttgttggctaacatcatggacaacaacttggccagggtggaaggggtggtgccgctc
ggggtgacaaaccagttcaccatgtctgtagttctgtccttctgggggagagaggagaac
agagatgcagtgttgaggcagataacttcccgcagcttcaaactgcagagtgggcctaca
gatggttctagaggtctgcccaggaagagtgtcctactgactgcagaagagttgaagaat
gcatttgacaatttatttgaaaacctgatggaggataagattggagagagagaggcagtg
gaggcagtgtgtactccgctgctgccccaccagaagcaggctctgagctggatgtgtgtg
tgtgaaaacaacgctgcgctgccccacttctgggaggttaagggggaactgttctataac
acactcacacactcctctgttagagagagaccgcagagggtccggggcggcatactggct
gacgacatgggactggggaaaacgttgaccaccatcgctctgatcctctccaacttccac
cacgggaaacctctgtgtgaaccggagaagtcttcccctgaacctaaggcctctaccacc
gcaaggaaaaaccctgaagggaagagtggcgacggggatcaggcagaagtgtctgtggct
cccgctggtcactccccttgtatgagagccaatcaggctgaaacccaggtggtgtgtgtg
gagtcagtggacttggtgcaagaggatgtagtggaggatggagacgaggactgggtgtct
gaaaagaaagtgaagggaaggccacagggaggcaaagccaaggccaccacaacaaagaaa
gctgctaagaccaaagggaaagcagtcagcacctcaagaaaagggggtgctgtgttggag
gacctggactttgcagcagcactgagtgggttaacaaagggagctcctcagaaaaagagt
gtcggtaaaagtgtagtttcgccggtggaagctgcctcttcccagagcacagacgaccca
gcagccagagccactctcatcatctgccccttatcggtactcagcaactggctggaccag
ttggatcaacatgtgcgagcggacgtcaagctgaatgtgtatctgtactatggctcggaa
cgcaacagggacacacacttcctgtcctcgcagcacatggtcctcaccacctacaacgtg
ctttctgctgactactcgggcagtgctagtcccctccatacagtgagctggttgagagtg
gtcttggacgagggccatattatcagaaacccaaacacccagcagagcaaggctgtactc
aaattaaacacacagagacgctggatactcacaggcactcccatccagaacaacctgagg
gatctgtggatgctggtggcttttctgcgtctgaagccgttcgacgtgagagagtggtgg
aacagagtcatacagagacctgtcacacagggggacaagacgggcctgcagaatctgcag
gctctggtgaagtgtgtcacgctgcgtcgtacgaagaccagccgtgtgtgtggtcggcct
ctggtctctctaccggagaggagtgtcagaatagaggaagtggagctgacacagaaggag
agggaggaatacgagctggcacgcacagagggacgcaccaccatcagcaggtacgttgca
gaggggaccgtcctcaggaactacgcagatgttctggctatcctagtcaggctgagacag
ttctgctgccaccctggcctactgggaaagaccactacacacacaggtgtggtagctgtg
actcctgcagagttgagagagcgtctgataatgaaactgaggctggtgctgggcactggc
tctgatgaagagtgtgctgtatgtctggactctgttcgtctgcccgtcatcacacactgt
gcacatgtctactgcagaccctgcatcgcagaggtcatacgcagtgagcaggagcaggca
cggtgccctctgtgcagaggccagatcaaggccagtgaactagtggagttccctctggag
gaggaggaggaggagagtaacctcttggagaactggaggagcagctccaaggtggaggct
ctaatgtctagcttgctcagactgcgcagtgaggacgacagcatcaggagtctagttgtc
tctcagttcacacgcttcctcactattctggagattccactcagggaggagggtttcaag
tttgtacgtctggacggcactatgagccagaaaaggcgggctcaggtcattcaggagttc
cagagcgacgcccctggcagcccattgatcatgctgctgtcactcaaagccggaggggtg
gggataaacctcagcgctgcatcccgcgtcttcctcatggacccagcatggaacccagca
gcagaggaccagtgtgtggaccggtgtcaccgcctcggccagaagagagatgttgtcatc
actaagttcatagtgaagggctccgtggaggagaacatggtgaagattcagaggcagaag
caggatctggtggagaaggcttttggcaccaagaaccacagtgagaggaagacgtcacgt
gttgatgaaatccgagccctgatggagctgtag

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