Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376814
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Entry
139376814 CDS
T10872
Name
(RefSeq) ATP-binding cassette sub-family B member 10, mitochondrial-like
KO
K05657
ATP-binding cassette, subfamily B (MDR/TAP), member 10
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
139376814
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139376814
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
139376814
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_22
ABC_ATPase
AAA_16
AAA_21
AAA
AAA_29
DUF87
Zeta_toxin
AAA_25
RsgA_GTPase
nSTAND1
AAA_33
AAA_5
P-loop_TraG
NB-ARC
Motif
Other DBs
NCBI-GeneID:
139376814
NCBI-ProteinID:
XP_070975851
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All DBs
Position
20:complement(69253166..69260770)
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AA seq
717 aa
AA seq
DB search
MGLLLLQLSKCPGVNILKREVHSRVHKLFWLECQTSRGQREVSGKRFEPVARTSLSHPKR
CNSLVPCVPLRQFTIPPHLLRNSWTATVHFANYSSSTDSKQATQQEVDSKDLQSTETKQS
PTRIPTEDVKRILQLAHPERLRLSAAVGFLMVSSAVTMSAPFFLGQVIDTIYTSSSEDFS
ASLRSLCIMLSGVFLCGGAANAARVYLMQISGQQIVRNLRVFLFSSILRQEVGFFDKTRT
GELINRLSADTALIGRSVTDNLSDGLRAVAQATAGVSMMFYVSPSLAAFVLLIVPPMAGL
AVIYGRYLRSISKRTQDSLAEATQLAEERISNMRTVRAFGKELTEVAKYTEKANYVLHLA
KQEAVLRAGFFGATGLSGNIIILSVLYKGGLLMASEHMTVGELSSFLMYAFWVGISIAGM
SSFYSELMKGFGAGARLWELLDRKPEFPLNEGIVLRPEQLKGQLEFQNVSFAYPTRKDAP
IFQDLSLSVPAGSVMAVVGPSGSGKSTLVSLLLRLYDPVAGVITIDGHDVRDLNPYWLRS
HIGTVSQEPVLFSCSIAENIAYGAPDSDTVTVQEIHRAAQIANAYEFVRGFPKGFDTVVG
EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEFLVQEALERLMDGRTVLII
AHRLSTIQNADAVAVLDQRRVVECGQHAQLLGNRQGLFRKLMEKQAFLQEGQKQALR
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgggactgttgctgttgcaattgtcaaaatgtccaggcgtgaatattttgaagcgcgag
gttcactcccgtgtacataaactattttggttagaatgccagacttccaggggacaacga
gaggtgagtgggaaaaggttcgaacctgtggcacgcacttcgctttcacacccgaagaga
tgcaactctcttgtgccctgtgtaccacttagacagttcaccatacccccccatttgttg
aggaactcatggacagcaactgtacactttgccaactacagctcttcgacagactcaaaa
caagcaacacaacaagaagttgacagcaaagatctgcagtcaacggaaacaaaacaatcc
ccaactcggatacccactgaggatgtcaaaaggattttacaacttgcccaccctgagcgc
ttgcgactgtcagcggctgtgggcttcctaatggtctccagcgctgtcacaatgtcggcg
cccttcttcctgggccaagtcattgacaccatctacaccagctcttcagaggacttcagt
gcctccctccgctctctgtgtatcatgctttcaggggtattcctttgtgggggcgccgct
aatgctgcccgtgtctacctcatgcaaatctcagggcaacagattgtgagaaatctacgt
gtattcctattctcctcgattctgaggcaggaggtaggtttctttgataagacccgtacc
ggggaactcattaaccgcctatctgcagacacggcactcatcggccgctccgtcacagac
aacctttctgacgggctccgcgctgtcgcccaggcaacagctggggtcagcatgatgttt
tacgtgtcaccaagtttagcagcctttgtgctgctgattgtgcctcctatggctggccta
gctgtcatatatgggagatacctgcgctccatatccaaacgtacacaggactctctggct
gaggccacacagttggcagaagaacgcatcagcaacatgaggacagttcgggcgtttggt
aaggagctgacagaggtggccaagtatacggaaaaggccaactatgttctccacctggcc
aaacaggaagccgttttgagggctggcttctttggcgcgactggactcagtggcaacatc
atcatcctgtcagtgctgtataagggagggctattgatggccagtgaacacatgactgtg
ggagagctctcttccttcctcatgtacgccttctgggtgggcattagcattgcaggtatg
agctcgttctactctgaactgatgaagggctttggcgcaggggcacggctttgggagcta
ctggacaggaagcccgagttccccctcaatgagggtattgtgctgaggccggagcagctt
aagggtcaactggagttccagaatgtctcctttgcctacccaacccgcaaagacgccccc
atcttccaggacctgagtctctctgtgcctgctggctccgtcatggccgtggtagggccc
agtggatcgggcaaatccactctggtctccctgttgctcaggctctacgacccagttgca
ggtgtgatcactatcgacgggcatgatgtgagagatttgaatccttattggctgaggagt
cacattggaactgttagtcaggagcctgtactcttctcctgttccatcgctgagaacatt
gcctatggagcgcctgactctgacacggtcacagttcaggaaatccaccgggctgcacag
atcgccaatgcttatgagtttgtccgaggtttcccaaaaggctttgacactgtggtggga
gagaagggtgttcttctctcaggtggtcagaaacagagaattgctattgcaagggctctg
cttaagaaccccaagatacttctacttgatgaggcgacaagtgccctggatgcagagaat
gagttcctggtccaggaggctctagagcggctcatggatgggcgcacagtgctgatcatc
gcccaccgcctctccaccatccagaacgctgacgccgtggctgtgctggaccagcggcgt
gtggtggagtgtgggcagcatgcacagctcctgggcaaccgccaaggcctcttcaggaag
ctgatggagaaacaagccttccttcaagaggggcaaaagcaagcgttgcgttga
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