Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376853
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Entry
139376853 CDS
T10872
Name
(RefSeq) homeobox protein SIX2a isoform X1
KO
K19472
homeobox protein SIX2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139376853
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
139376853
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeobox_KN
Homeodomain
HTH_3
HTH_NDX
Phage_mat-A
Motif
Other DBs
NCBI-GeneID:
139376853
NCBI-ProteinID:
XP_070975912
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All DBs
Position
20:complement(71003173..71007736)
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AA seq
289 aa
AA seq
DB search
MSMLPTFGFTQEQVACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHR
GNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRS
IWDGEETSYCFKEKSRSVLREWYTHNPYPSPREKRELAEGTGLTTTQVSNWFKNRRQRDR
AAEAKERYEENNENSNTNSHNPLTSSMNGNKTLLGSSDDDKTPSGTPDNTSSTPAMLIAS
NSGLQMHGLAPPPGPSAMPVSSHDSVHHHHSLHDTILNPMSSNLVDLGS
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgcttccaacttttggctttacgcaagagcaagttgcttgcgtctgcgaggtc
ctccaacagggtggaaacattgaacggctcgggcgctttttgtggtctttacccgcgtgt
gagcaccttcacaaaaatgaaagtgttctcaaagctaaagctgtggtcgcattccacaga
ggaaatttcagagagctttataagatccttgagagccaccaattttcccctcacaatcac
ccgaagctgcagcagctgtggctcaaagcgcactacgtcgaggcggagaagcttcgaggc
cgccctctcggggctgtgggaaagtaccgcgtccgcagaaagttccccctgcctcggtct
atctgggacggcgaggagacaagttactgtttcaaagagaaaagccggagcgtactcagg
gaatggtacacacataacccctatccttccccgcgagagaagagggagctcgccgaaggc
accgggttaacaaccacgcaagtcagtaactggttcaaaaacagacggcaaagagaccgt
gcggcagaagcgaaggaaaggtacgaggaaaacaacgaaaactccaacaccaacagccac
aacccattgacttcttccatgaatggaaataaaacacttttggggagctcagacgacgac
aaaacaccttcagggactccggataacacctcgtcgactccggctatgctcatcgcttca
aactcggggctgcagatgcacggcctagcgcctccacccgggcctagcgccatgccagtg
tccagccatgactctgtgcaccatcatcactcattgcacgatactatactgaaccctatg
tcgtctaacctggtcgacctcggctcttaa
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