Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376873
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Entry
139376873 CDS
T10872
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
139376873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139376873
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
139376873
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
139376873
NCBI-ProteinID:
XP_070975944
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All DBs
Position
20:72227232..72260859
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AA seq
1387 aa
AA seq
DB search
MAKQSSIFNFFNKSPPPVLKAKPSPSPAEADLPSSVRKKNSSPKEEAKHASQTPTTKKTP
AKPLNAKASKGGFGKLFGNKTLTIKESPAPCPFSAGALVWAKLEGHPWWPCMVAPQPVGG
QQMRGRGKSQRLHVHFFDEPPTRGWVSTKYIREYQGSDSSDAKTGGVFFSGKPVIRKAME
LADAAMPDSPETRLKMPVCMDPSDAEEDDEEEDMELDKSTLTDEDLTEEEDEETVKSKPS
RRSSRATAEQGSKSKRRRIVVASDSEGSGDEFKPEQAGCSSEEDEEEVVNSMSEEDVESE
CEAEPDSPVKPVKRKRPIEKPSSAKPKPKTPTLPETAKRAPLSSTITADTKSRLSAFSAP
ESFDSQANGSGAGGQGGATVWDHEKLDWLQEGRRKDAKRRRQSEEDYDPTTLYVPEDFLN
KTTPGMRRWWQLKSETFDAVLFFKVGKFYELYHMDAVIGVNELGLTFMKGAWAHSGFPEI
GFGRFSDGLVQRGYKVARVEQTETPDMMEARCKTMLKPTKFDRVVQREVCRIITRGTQTY
SVLDGAPSETHSKYLLSIKEKAEEESSGRCRTYGVSFVDTSVGYFYVGQFQDDRHCSRLR
TLLSHYTPAQVLFEKGNPSAETRKIFKASLSSAMQEGLTAGSQFWDAQKTLKTLAEEDYF
KESVRKDEESGSSVLPSVLKSMTSESDSLGLTPKEGYELALSALGGCMFYLKKCLVDQEL
LSMTNFQEYIPVDVEMEKAGGPTSFFSQTRQRMVLDGVTLANLEILQNVSGGTEGTLLER
LDTCSTPFGKRLLKQWLCSPLCNPTSIGERLDALEDLMGVQAQATEVSDLLKKLPDLERL
LSKIHSIGTPKGQDHPDSRAVLYEEVTYSKKKIVDFLSALEGFKTMQEIVTILGPVAVDF
RSRLLRQVVNLKDDGQEGLFPDLSAELKRWDTAFDHQKARATGVITPKTGFDPEFDQALS
GIKACERDLQDYLDRQKKRLGCRNLTYWGTGRNRFQMEVPDSVSERNIPEEYKVKSTKKG
WKRYWTREIERLFSELQSLEEKRDAALKDCMRRLFYNFDKNYRDWQTGVECMAVLDVLLS
LTRYSQGGDGGPMARPQVLLPGDISQSAAFLDLRGSRHPCVTKTFFGDDFIPNDIAIGCP
GGEEEGQEDKGHAPCVLVTGPNMGGKSTLMRQCGLVVVLAQLGCYVPAESLSFTPVDRVF
TRLGASDRIMAGESTFFVELSETASILHHGTKHSLVLLDELGRGTATYDGTAIASAVVNE
LAKRICCRTLFSTHYHSLVEDYTNNPAVRLGHMACMVENEGDEDPSQETITFLYKFIAGA
CPKSYGFNAARLANLPEDVIQSGHKKAKEFERSTISLRVFKKLCLYAEDPTAASTQFALL
LRMISNL
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagcagcattttcaattttttcaataagtctccgccaccggttctgaag
gcgaaaccgagtccctcgcctgcagaagccgacttgccatcctcagttcgaaaaaagaac
agctctccaaaagaagaagctaagcatgcatctcaaactcccaccaccaaaaagactcct
gcaaaaccccttaatgcaaaagcaagcaaaggcggattcggcaaactctttgggaataag
acactaacaataaaggagagtccagcaccatgtccattcagtgccggagccttggtgtgg
gccaagctagaggggcacccctggtggccgtgtatggtagctccccagcctgtcggcggg
cagcagatgaggggtaggggtaaaagccagcgcctgcatgtccacttcttcgatgagcca
ccgaccaggggctgggtcagcaccaaatatatccgcgagtatcaaggctcggacagcagt
gatgctaagacaggaggggtgttcttcagtggtaagcctgtgatccgcaaggccatggag
ctggctgatgctgctatgccagacagcccagagactagactgaagatgcctgtctgtatg
gacccatctgatgctgaggaagacgacgaggaggaggatatggagcttgataagtcaaca
ttgaccgacgaagatttgactgaagaggaagatgaggagacggtgaagtctaagcctagt
cgccgttcctcccgtgccacagcagaacagggcagcaagtccaagcgtcgccgcatcgtg
gttgcctccgacagtgaaggctcgggtgacgaattcaaaccagaacaggccggatgcagc
agtgaggaagatgaggaagaggtagtgaacagtatgtcggaggaagatgtagaaagtgaa
tgtgaggctgaacccgacagcccagttaaaccggtgaaacgcaaacgacccatagagaag
ccatccagtgccaaaccaaaacccaagactcccactcttccagaaaccgccaagagagcc
cccttatctagcaccatcacagccgacaccaagtctcgactctcagccttttcggccccg
gagagcttcgacagccaggcgaatggctcaggtgccggcgggcaaggtggggctacggta
tgggaccatgagaagcttgattggctacaggaaggccggaggaaagacgccaagagacgg
agacagtctgaggaagactacgatcccacgactctgtatgtcccagaagacttcttgaac
aaaacgaccccaggcatgcggcgctggtggcagctcaagtcggagacgttcgatgccgtg
ctcttcttcaaggtgggtaagttctatgagctgtaccacatggatgctgtgattggtgtc
aacgagctggggctgaccttcatgaagggggcctgggcccactctggcttccccgagata
ggctttggacgcttctcagatggactggtgcagaggggatacaaggtggcacgtgtggag
cagacggagactccagacatgatggaggctcgctgtaagaccatgctgaagcccaccaag
tttgaccgggtggtacagcgtgaggtgtgccgaatcatcacacggggaacgcagacctac
agcgtgttggacggagccccttctgagacacacagcaaatacctcctcagcatcaaggag
aaggcagaggaggagagttcagggcgctgcaggacctatggggtcagcttcgtggacaca
tctgtagggtacttctatgtgggccaattccaggacgaccgacactgctcccggctccgc
accctgttgtctcactacacccctgcacaggtgctctttgagaaggggaacccttcagcc
gaaacccgtaaaatcttcaaggcttctttgtcctctgctatgcaggaggggctgactgca
ggctcccagttctgggatgcacagaagaccctgaagaccctagctgaagaagactacttt
aaagagagtgtgaggaaggatgaggagtctgggagcagtgttctcccctctgtcctcaaa
tccatgacgtctgagagcgactcgttgggtctgacccctaaggaggggtatgagttggct
ctgtcggccctgggaggctgtatgttctacttaaagaaatgtctggttgaccaggagctg
ctgtccatgaccaacttccaggaatatatcccagtggacgtggagatggagaaggcaggc
gggccgaccagtttcttctcccagacccgtcagcgtatggtcctggatggggtgacccta
gccaacctggagatcctgcagaatgtgtcggggggtacagaggggaccttgttggaacgc
ctggatacctgtagtactccatttggtaaaaggttgctgaagcagtggctctgttccccg
ctctgtaaccccacatccataggggaacgcctggatgccctggaggacctgatgggagtg
caggcccaggctacggaggtctcagacctgctcaagaagctccctgatctggagaggctc
cttagtaagatccacagcatcggtactccgaagggtcaggaccacccagacagcagggct
gttctgtatgaagaggtcacctacagtaagaaaaagattgtggacttcctctcggctctg
gagggcttcaagaccatgcaggagattgtgaccatactaggaccggttgcggtcgacttc
cggtccaggctgctgcgccaggtggtcaacctgaaggatgacggtcaggagggcctcttc
cctgacctttcggccgagctgaaacgctgggacacagccttcgaccaccagaaggcccgc
gccaccggagtcatcacccctaagactggctttgacccagagtttgaccaggctctcagt
ggcatcaaggcctgtgagagggacctacaggactacctggacaggcagaagaagaggctg
ggctgcaggaacctgacctactgggggacgggacggaaccgctttcagatggaagtacca
gacagtgtctcggagaggaacattcctgaggagtacaaggtgaagtccactaagaagggc
tggaaacgctactggaccagggagatagagcgtctgttctcagagctccagagtcttgag
gagaagagagacgcagctctgaaggactgcatgagaagactcttctacaactttgacaag
aactatagggactggcagactggggtggagtgcatggctgtgctagatgtgttactgagt
ctgacacggtacagccaggggggtgatggaggaccaatggcacggcctcaagtactactt
cctggtgacatcagccaatcagcagccttcctggacttgaggggctcccgccacccctgt
gtcaccaaaaccttcttcggtgatgacttcatccctaatgacattgctattgggtgccct
ggcggcgaggaggagggccaggaggataaaggacatgcaccctgcgtgctggtcactggg
cctaacatgggaggaaagtcgactcttatgagacagtgtggtctggtggtggtcttggcc
cagttgggttgctatgttcctgctgagagcctgtcctttacccctgtggacagagtcttc
acccggttgggagcttcggaccgtatcatggctggggagagcaccttctttgtagagctc
agtgagactgcaagtatcctccaccatgggaccaagcactccctggtgctgctggatgaa
ctgggaaggggcacagccacatatgacggcacagcgatagccagtgctgtggtgaacgag
ctggcgaaaaggatctgctgtcggaccctcttctccacacattaccactccttagtagaa
gactacaccaacaaccctgctgtacggctcggacacatggcctgtatggtggagaatgag
ggagatgaggaccctagtcaggagaccatcaccttcctctacaagtttatcgcgggagct
tgtcctaaaagctacggtttcaacgctgctcgcctcgccaacctgcctgaggatgttata
caatcaggccacaagaaggccaaggagtttgagaggagcaccatttccctacgagtcttc
aagaagctgtgtttgtatgctgaagaccccacagcagccagcacacagtttgccttgctc
ctccggatgatcagcaacctgtga
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