Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376939
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Entry
139376939 CDS
T10872
Name
(RefSeq) nucleolar RNA helicase 2-like isoform X1
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ocla03009
]
139376939
03036 Chromosome and associated proteins [BR:
ocla03036
]
139376939
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139376939
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
Pre-60S particles
Helicases
139376939
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
139376939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
ResIII
CMS1
Gly_acyl_tr_C
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
139376939
NCBI-ProteinID:
XP_070976058
LinkDB
All DBs
Position
20:77580345..77587769
Genome browser
AA seq
749 aa
AA seq
DB search
MPSKIIFETEDIGMEGEMDISAGSTTPKKIKEKKTKEGKKIKKQKTVVGEEPDCEPPAPK
KKKKKNKEKEDKTNGGAEVDVNSNAEESPLKDNTSHSNEESADNDKATEKKKKKKKKGKK
TDEKVIVNEVLPETPTLIAQTNGHTAAITPAQSSEDSDSGKETETPEQKEGAFSNFRISP
NTIKLLQARGISYLFDIQTQTFNSVYEGKDVIGQARTGTGKTLAFAIPLIEKLQNDPDDK
KRGRAPKILCLAPTRELAIQVSKDFKDMTKKLSVTCFYGGSSYNPQLDAIRSGIDILVGT
PGRIKDHLQNNKLDLSQLKHVVLDEVDQMLDMGFAEQVEEILSASYQKDSETNPQTLLFS
ATCPSWVYDVAKRYMRPTYEHVDLIGKKTQKAATTVEHLAIACHWSQRAAVIGDVVQVYS
GSHGRTIVFCETKKDANELSMNASIKQSSQSLHGDIPQKQREITLKGFRSGTFEVLVATN
VAARGLDIPEVDLVVQCSPPKDVESYIHRSGRTGRAGRTGVCICFYQRKEEDQLRYVEQK
AGITFKRVGVPTANDIIKSSSKDAVRFLDSVPPQAIEYFRVSATKLIEERGAVEALSAAL
AHISGATALEQRSLLNSDTGYTTMTMNCSQELQNIGCAWRGLKEQLGEEIDNMIRGMTFL
KGKMGVCFDVPADKVKEYQDAWQDGRRWQLSIATELPELEEKPRMGGDRGYGRSFGGQGG
GRGFRNGGGGGNWRGGGSHKRSFSSAFDY
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaagattatttttgaaaccgaagacatcgggatggaaggtgaaatggacatt
agtgcgggcagtacgacacccaaaaaaataaaggagaagaagaccaaggagggaaagaaa
atcaagaaacagaaaacggttgttggagaggaacctgactgtgaacctcctgctcccaag
aagaagaagaagaagaataaggaaaaagaggacaaaactaacgggggcgcagaagttgat
gttaacagcaacgcagaagaatcgcctttgaaggacaacacatctcattccaatgaggag
tctgcagacaatgacaaagcaactgagaagaagaagaagaagaagaaaaagggaaaaaag
acagatgaaaaggtcatcgtcaacgaagtgttgcctgagactcccacgctgattgcacaa
actaatgggcataccgcggcgataactccagcacaatcaagcgaggactccgacagtgga
aaagaaaccgagacgccagaacagaaagagggagccttctctaacttccgaatctccccc
aacaccattaaactacttcaagcaagaggcatatcttacctctttgacatccaaacacaa
accttcaattctgtgtacgagggaaaggatgtgattggccaggcaagaacaggcactggg
aaaactttagcttttgccattccgctgattgagaaactccaaaatgacccagatgacaag
aagaggggcagagccccaaagattttgtgccttgcgccaaccagagaattggctattcaa
gtatccaaggatttcaaggacatgacaaagaaactgtctgttacttgtttctatggtggg
agctcctacaacccccaacttgatgcgatccgcagtggcatcgatatcctagtgggaact
ccaggtcgtatcaaggaccatctacagaataacaaactggacctgtctcaattgaagcac
gttgtattggatgaagtggaccaaatgcttgatatgggctttgcagaacaggtggaggag
atactgtctgcgtcttaccaaaaagactctgagaccaacccccagaccctgctcttctct
gccacatgcccatcatgggtgtatgatgtggcaaagaggtacatgaggccaacctatgag
catgtggacctcattggcaaaaagacccagaaagctgccaccacagtagagcaccttgcc
atagcgtgtcactggtcccagagggctgcagtcattggggatgtggtgcaggtttacagc
gggagccacggccgcaccatcgtcttctgtgagaccaagaaggatgccaacgagctgtca
atgaatgcctccataaaacagagttcccagtcacttcatggggacattcctcagaagcag
agggagatcacactgaaaggcttcagaagtggcaccttcgaggtcttagtggccaccaac
gttgctgcccgcgggttggacatcccagaggtagacctggtcgtgcagtgctcaccccca
aaggatgtggagtcctacattcaccggtcaggtcgaactggtcgggctggcaggactggc
gtctgcatctgtttctaccaacgcaaagaggaagaccagctccgatatgtagagcagaaa
gcaggcattacatttaagcgagttggagtgcccactgccaatgacatcatcaaatcctcc
agtaaagacgcagtgaggtttttagactctgtgcccccccaagccattgagtatttccgc
gtgtctgctaccaagctgattgaggagcgtggggccgtggaggccctgtctgccgccctg
gcacacatatcaggagccactgccttggagcagaggtccctcctcaactctgacactggc
tacaccacaatgacaatgaactgctcccaggagctgcaaaacattggctgcgcctggcgt
ggtctgaaggagcaactgggagaggagattgacaacatgatccgggggatgaccttcctc
aagggcaaaatgggagtctgttttgatgtcccggctgacaaggtaaaggagtaccaggat
gcctggcaggatggtagacgttggcagctgtcaatcgccacagagcttcctgagctggag
gagaaaccgcgcatgggtggtgaccgtggatatggacgttccttcggaggacagggaggt
ggccgtggcttcagaaacggcggcggcggtggcaactggagaggtggaggcagtcataaa
cgcagcttcagcagtgcgtttgattattaa
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