Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139376985
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Entry
139376985 CDS
T10872
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
139376985
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139376985
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
139376985
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
SR-25
Motif
Other DBs
NCBI-GeneID:
139376985
NCBI-ProteinID:
XP_070976121
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Position
20:complement(82066105..82264125)
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AA seq
1250 aa
AA seq
DB search
MLVIEHGNISLGIGSLRIMPKGKHSYYPDSPSIRISKMDVIIPFSPDVPCDSNGQRMWWA
FLASSMVTFFGGLFIILLWRSLNYLWTVCCHCNTKKKNVHRVHHPISHGDGVKHTKETVA
ALSEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALVIYFIDSSDPIESCQNFYK
DFTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGL
RFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENF
QNSQSLSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELI
GNRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLE
LEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVIS
IKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTM
LANLFSMRSFIKIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPTICELCYVKLKLLLI
AIEYKSDIRESSTLINPGNHVKMQEGTLGFFIASDAKEVKRALFYCKACHDDITDPKRIK
KCGCKRSKNNYNGYIKSMEEEQQSAVSPKKKQGNGNTRNSPNGSPKMMRHDPLLMPGNEQ
IDNMDVNVKKYDSTGMFHWCQSKDIEKVILTRSEAAMTVLSGHVVVCIFGDAKSALVGLR
NLVMPLRASNFHYHELKPIVFVGSLEYLKREWETLHNFPKVSILPGTPLSRADLRAVNIN
LCDMCVILSANQSNIDDASLQDKECILASLNIKSMQFDDSIGVLQATSQGFTLPGIDRSS
PENSPVHGGLVRQASITTGANVPIITELAPLVKAAGKVLPVISFSQDTSSGINIHIITEL
VNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVT
GGATPELEGLLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCK
ALKTYNMLCFGIYRLRDAHLNTQSHTSQCTKRYVITNPPYGFELVPSDLIFCLMQFDHNA
GQSQASLTHSSHSSHSSSKKSSSVHSIPATNRTNRAKSRDSRDKQKMNRMGQEKTYFIDE
PENAAYPRKSHSSHTANHQVNHQVNHQVNQNPYKSTNNLIPSIREVEDEY
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgctagttatagaacatggcaacatatccctgggcatcggtagcctcagaataatgcct
aaaggtaaacatagttactatccggactctccctctatccgcatatccaagatggatgtg
atcatcccgttctccccagatgtgccctgtgatagcaacgggcagcgcatgtggtgggct
ttcctcgcctcctccatggttacgttctttgggggtctcttcatcattctgctctggaga
tctctcaactacctgtggaccgtctgctgccactgtaataccaaaaaaaagaatgttcat
cgggtccatcaccctatctcccatggggatggcgtcaagcacaccaaggagacggtggct
gcactcagcgaggtgggctggatgacctccgtcaaagattgggccggggtcatgatatca
gcccagacactgacgggcagggtcctggtggtgcttgtctttgccctcagcatcggagcc
cttgtaatatacttcatcgattcctctgaccccatcgagtcctgtcagaacttctacaaa
gacttcacgctacagatcgacatggctttcaacgtcttcttcctcttgtactttggtcta
cggttcatagcggccaatgacaagctgtggttctggctggaggtgaactcggtggtggac
ttcttcactgttcccccggtgttcgtgtccgtctatctcaacaggagctggcttggctta
cggtttttaagggccttaagattgatacagttctcagaaatcttacagtttttgaatata
ttaaaaacaagcaattccataaaactggtgaacttgtgttcaatcttcataagcacatgg
ctaacagctgcaggcttcatacatttggtggaaaactcaggggatccttgggaaaacttc
caaaattcccagtcactttcctactgggaatgtgtctacttactgatggttaccatgtcc
actgtgggctatggagacgtgtatgccaaaactaccctgggacgacttttcatggtgttc
ttcatcctcggtggtttggccatgtttgcgagctacgtccctgaaatcatagagttaata
ggaaaccgcaagaaatatggtggttcctatagtgctgttaatgggagaaagcacatcgtg
gtctgtggtcatattacccttgaaagtgtgtccaacttccttaaagacttcctacacaag
gacagggatgatgtcaatgtagaaattgtttttctccataatatttcccctaatcttgag
ctggaagccttgttcaagcggcacttcacccaggtggagttctaccagggatctgttctc
aacccacacgacctggccagagtcaagatagagtcagcagatgcctgtttgatcctagct
aataaatactgtgcagaccctgatgctgaggatgcttccaacatcatgagggtgatatcc
atcaagaactaccacccgaagatcagaatcattacccagatgttgcagtaccacaacaag
gcccaccttttgaacattcccagttggaactggaaggagggtgacgatgccatttgcctt
gctgagctgaagcttggcttcatcgcacagagttgtctggctcagggcctctccaccatg
ctggccaacctcttctccatgaggtcctttatcaagattgaagaggacacgtggcagaag
tattatctggaaggagtagccaatgaaatgtatactgagtacctgtctagtgcctttgtg
ggcttatccttccccaccatttgtgaactctgctatgtgaagctaaagctgctactgatc
gctatcgagtacaagtctgatatacgggaaagcagcactctcatcaaccccgggaaccat
gtgaagatgcaggaaggaaccttggggttctttatcgccagcgatgccaaagaagttaag
agggcacttttctactgcaaagcttgccacgatgacatcacagatcctaaaaggataaag
aaatgtggatgcaaacgatcaaaaaataactataacggatatatcaaatcaatggaagaa
gagcagcagtcagctgtttcgcctaaaaagaaacaaggcaatggaaacacgaggaactca
cccaacggttcaccaaaaatgatgaggcatgaccctctcctcatgccggggaacgaacag
attgacaacatggacgtgaacgtgaagaagtacgactccacagggatgttccactggtgc
cagtccaaagacatcgagaaggtcatcttgacccggagtgaagcagccatgactgttcta
agcggccacgtggtcgtctgtatatttggagacgcaaagtcggctttggtgggccttagg
aaccttgtgatgcctctgagagctagcaacttccactaccacgagctgaaacccatcgtg
tttgtgggttccctggagtacctgaagagggaatgggagacccttcacaacttccccaaa
gtctccatcttacctggcacaccattgagccgggccgatctgagggccgtcaatatcaac
ctctgtgacatgtgtgtcatcctgtcggccaatcagagcaatatcgacgacgcgtcactg
caggacaaggaatgcatcctggcgtcactcaacatcaagtccatgcagtttgacgacagc
atcggggtgttgcaggctacctcccaaggttttaccctgccaggcatagacaggtcctct
cctgaaaacagtccagttcacggggggttggtccgacaggcttccatcacaacaggagcc
aatgtccccatcatcactgaactagcaccgttagtaaaagcagcaggcaaagtcctacct
gtgatttcattcagtcaggatacaagcagtgggatcaacatacacataataacagaactg
gtgaatgactccaatgttcagttcctggaccaggatgacgacgacgaccctgacacggag
ttgtacctcactcagcccttcgcctgtgggacggctttcgcagtcagcgtgctggattcc
ctgatgagtgctacatacttcaatgataatatcctcaccctgatccggacgctggtaaca
gggggggccactccggagctggagggtctgttggcggaggagaatgcattacgaggaggc
tacagcacgccgcagaccctcgctaaccgggacaggtgtcgtgttgcacagctagccttg
tacgacgggcctttcgctgacttgggggatggtggttgctacggtgacttgttttgtaaa
gcgttaaaaacatacaacatgctttgcttcggaatttaccgattgagggacgcccatcta
aacacacaaagtcatacaagtcaatgcactaaacgatatgtaataaccaacccaccgtat
ggttttgagctggtgccatcagacctgatcttctgcctgatgcagtttgaccacaacgcg
ggtcagtcccaggccagcctcacccatagctcccactcctcccattcctccagcaaaaag
agctcctccgtccattctatccccgccaccaaccgcaccaaccgcgccaagagcagggac
tcacgggataaacaaaagatgaatagaatgggccaagaaaagacatactttatagatgag
cctgagaacgcagcctaccccaggaagtcacactctagtcacacagccaaccaccaggtc
aaccaccaggtcaaccaccaggttaaccagaacccttacaaatccaccaacaacctcatc
ccgtccatcagagaggtggaggacgaatactga
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