Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139377271
Help
Entry
139377271 CDS
T10872
Name
(RefSeq) transcription factor Sox-14-like
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139377271
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139377271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
139377271
NCBI-ProteinID:
XP_070976377
LinkDB
All DBs
Position
20:11871254..11871988
Genome browser
AA seq
244 aa
AA seq
DB search
MLMRISPCAIEMAKPLDHIKRPMNAFMVWSRGQRRKMSLENPKMHNSEISKRLGAEWKLL
SESEKRPYIDEAKRLRAQHMKDHPNYKYRPRRKPKSLLKKDRFLFPFPFLGDAEHLKGFS
TESILASAEKARALLPPTSSPYSLLDSGQFSTGAVQRISEIPHALAANGLSYAPSLGYQT
GAFGSLGCPSQHTHTHPSSTNPGYALPCNCGTWSATGLQPQVAYILFPGMAGIDPYSCSP
HSSV
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgttgatgcgcatttcaccgtgcgctattgagatggcaaaacctttggatcacataaag
aggcccatgaacgctttcatggtgtggtctcgcggtcagagacgaaagatgtcactggag
aatcccaaaatgcacaactctgaaatcagcaaaagacttggcgcggaatggaagttgctt
tccgaatcagagaagcgaccatacattgatgaagccaagagattgcgcgcgcaacacatg
aaagatcaccccaactacaagtacagacctcggcgcaaacccaagagcttgctaaagaag
gaccggttccttttcccctttcccttcctcggggacgcagaacatttgaaaggattttcc
acggagtccattttggcttccgctgagaaagctagagcccttttgccgccgacatcatca
ccatactcgctccttgactcaggtcaattcagcaccggtgctgtccagaggatctcagaa
attccccacgcgctggctgccaacggcttgtcctatgcgccctctttgggataccagact
ggcgcgtttggaagtttgggatgccccagccagcacactcatactcacccgtcctccacg
aacccggggtacgccttgccctgtaactgtggcacctggtcggcgacgggtttacagcct
caggttgcatacatcctttttccaggtatggccggcatagacccgtactcctgttcacca
cattcaagtgtgtga
DBGET
integrated database retrieval system
