Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139377278
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Entry
139377278 CDS
T10872
Name
(RefSeq) ATP-dependent DNA helicase PIF1
KO
K15255
ATP-dependent DNA helicase PIF1 [EC:
5.6.2.3
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ocla03032
]
139377278
03029 Mitochondrial biogenesis [BR:
ocla03029
]
139377278
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139377278
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
139377278
Mitochondrial biogenesis [BR:
ocla03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
139377278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIF1
Pif1_2B_dom
AAA_30
AAA_19
UvrD_C_2
AAA_22
DEAD
Herpes_Helicase
Mg_chelatase
RsgA_GTPase
AAA_7
ABC_tran
AAA_16
PhoH
AAA_5
Motif
Other DBs
NCBI-GeneID:
139377278
NCBI-ProteinID:
XP_070976384
LinkDB
All DBs
Position
20:complement(12432193..12442130)
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AA seq
639 aa
AA seq
DB search
MMQGDDGAQLQCSVVVERLNSSGQATKRQVIRKAAVLLGRNEFQEIILRVHNGKVTESYT
LKEFQLFTRFAKDGKCTVKLLPENVQVLISDCPPHLLNIFLKTLSIKHQAWQTSKPMTDR
EKLKACLPRSFETISPLQQKDVQKANELRSKVNAPVLSKGLVVRTGNKMTGGPPGQQVKR
QRTDCDSSPLKALHPSKKPTLSLPAARKLNKEQAAVLSAVLSGKNVFFTGSAGTGKSFLL
KRIVGSLPPKSTYATASTGVAACHIGGTTLHNFAGIGSGSAPLEQCIELAQRPGVLQHWT
SCRHLIIDEISMVEAQFFDKLEAIARCLRRSTEPFGGIHLIVCGDFLQLPPISKEKDKAT
FCFQSRSWRKCIHLNMELTEVRRQTDQSFISLLQAVRVGRITEEVTAKLIKSAYHKIERD
GILATRLCTHKDDVELTNDNKLQQLPGSVRVFEAVDSDPALVKTIDSQSPVSRLLQLKVG
AQVMLTKNLDVQRGLVNGARGVVVDFQPGKLGLPRVRFLCGTTEALKPERWMFKAGGGLY
LSRQQLPLKLAWAISIHKSQGMTLDCVEISLARVFERGQAYVALSRAKSLEGLRVMDFDP
HVVRADPDVLHFYSKLRKERLLLQASMNEFVGKSNKANR
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaggggacgacggtgcccagctccagtgcagtgtcgtggtggagcgcctgaac
tcctctggccaggccaccaaacgccaagtcatccggaaggcagctgttcttctcggtcgc
aacgagttccaggagataatcctgcgcgtgcacaacggcaaagtgaccgaaagttacacg
ctcaaagagttccagctttttacccggtttgctaaggatggcaagtgcaccgtcaaactg
ctccccgaaaacgtccaagtgctcatctctgactgcccgccccacctactaaacattttc
ctgaagaccttgagtatcaaacaccaggcctggcagactagcaaacctatgacagaccga
gagaagctgaaagcctgtttgccccgcagcttcgagaccatcagcccattacagcagaag
gatgtacagaaggccaatgagctgaggagcaaagtgaatgcaccagtgctctctaaaggt
ctggtagtgaggactggtaataagatgacaggaggaccaccgggacagcaggttaagaga
caaaggacggactgtgactctagcccattgaaggcactccacccaagcaaaaagcccacc
ctgtctctaccggcggcacggaagttgaacaaagaacaagccgctgtcctcagtgctgtg
ttgagtgggaagaatgttttcttcaccggcagtgcaggcacagggaagtccttcctgttg
aagaggattgtgggctctctgccgcccaaaagcacttacgccacggccagcacgggcgtg
gcggcgtgtcacattggggggacaacgctacacaactttgctggtatcgggtcaggctcc
gcccctctggagcagtgtatagagctggcccagaggcccggggtcctgcagcactggact
agctgtcgccacctcatcatcgacgagatctccatggttgaggcccagtttttcgacaag
ctggaggccatagccaggtgtctgaggaggtccacagagccgtttggaggaatccatctg
atagtgtgtggggacttcctccagctgcccccgatctccaaggaaaaggacaaggccacg
ttctgcttccagtctagaagctggcggaagtgcatccatctgaacatggagctgactgag
gtgcgcagacagactgaccagtctttcatctccctcctgcaggcagtgagggtgggcaga
atcacagaggaagtcactgccaagttgataaagagcgcctatcacaagatcgagcgggat
ggtatcctggcaaccaggctttgcactcacaaggacgatgtagagctcactaacgacaac
aagctccagcagctgccagggtcagtgcgggtgtttgaggctgtggacagcgaccctgca
ctggtgaagaccatagacagccagagtcccgtcagcaggctgctgcagcttaaagtgggc
gctcaggtcatgctaacaaagaacctagatgtccagcgtggcctggtcaacggggctcga
ggtgtcgtggtggactttcagccggggaaactagggctcccacgcgtgcgtttcctgtgc
ggcaccactgaggcgttgaagccagagcgttggatgttcaaggccggaggcgggctttat
ctgagccgccagcagctgccactcaaactggcctgggccatctctatccacaagagccag
ggcatgacgctggactgtgtggagatctctctggcacgtgtgtttgagaggggccaggcc
tatgtggcgctgtctcgggccaagagcctggaggggctaagggtcatggactttgacccc
cacgtggtccgtgccgaccccgacgtgctgcacttctacagcaagctgaggaaagagagg
ctactgttgcaggcttcaatgaatgagtttgtgggcaaaagtaacaaggcgaatcgttga
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