Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139377340
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Entry
139377340 CDS
T10872
Name
(RefSeq) tiggy-winkle hedgehog protein-like
KO
K11988
sonic hedgehog
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
139377340
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ocla01002
]
139377340
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139377340
Peptidases and inhibitors [BR:
ocla01002
]
Cysteine peptidases
Family C46: hedgehog family
139377340
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Morphogens
139377340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
DHQS_2nd
DrmE_C
Intein_splicing
Hom_end_hint
VldE
Ribosomal_S6e
Vint
Motif
Other DBs
NCBI-GeneID:
139377340
NCBI-ProteinID:
XP_070976464
LinkDB
All DBs
Position
20:complement(23463947..23466782)
Genome browser
AA seq
415 aa
AA seq
DB search
MDMMLMSIRLALVGFICLSLVSAGFACGPGRGYGKRRHPKKLKPLAYKQFIPNVAEKTLG
ASGKYEGKITRNSERFKDLTPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKNKYGMLSRLAVEAGFDWVNYES
KAHIHCSVKAENSVAAKSGGCFPGSASVLLEDGRSKLVKELEVGDKVLAADKEGHIVSSD
FLMFMDRDPVTSREFYVFETEKPNRKLRLTPAHLVFVTNNVTDGDMTAVFASNVKPGQQV
FVVDEALDHLKAVTVERIYVEEYEGSYAPVTSQGTIIVDHVLASCYAVIEDHKWAHWAFA
PVRLGHALMSLTGLVKEREEIPQRDGIDWYSDILYHIGTLLLDRNSFHPLGMSQS
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atggacatgatgctgatgtcgataagacttgcgcttgtgggcttcatctgcctgtcttta
gtatccgctggcttcgcctgtggtccaggtaggggatatggaaaaagaagacatccgaaa
aaactgaagcctttggcttacaagcagttcattcccaacgtggcagagaagacccttggg
gccagtggcaaatacgaagggaagatcacaaggaactctgaaagatttaaagacctgaca
ccaaactacaatcctgacattattttcaaagatgaggaaaacactaatgctgacagactt
atgacacagagatgtaaggacaaactgaactctttggccatttcagtcatgaatcagtgg
ccgggagtgaagctgcgcgtgacagaaggctgggacgaggatggacaccatttcgaggaa
tctttacactatgaaggaagggctgtggatatcaccacctctgacagagataaaaacaag
tatggaatgttatccaggctcgcagtggaggcgggattcgactgggtcaattatgaatcc
aaagcccatattcattgttctgtgaaagcagaaaattcagttgctgcaaaatcgggtggc
tgcttcccaggatccgcctcagttcttctcgaggatggtcggagcaagctggtaaaggaa
ctggaggtgggcgacaaagtgttagctgcagacaaagaaggacatattgtatctagcgat
ttccttatgttcatggaccgagatccagtaacaagtcgagaattttatgtttttgaaacg
gagaagcccaacagaaagttaagactgacgccggcacaccttgtcttcgtcaccaataac
gttacggatggcgatatgactgcagtgtttgccagtaatgtaaaacctgggcaacaggtg
tttgtcgtggacgaggcactagaccacctaaaggcagtcactgtggaaaggatttacgtg
gaagaatacgagggatcttatgcaccagtgacttcacaaggaaccatcatagttgaccat
gttttggcgagctgttacgcggtaatcgaggaccacaaatgggcgcactgggcatttgca
ccagtccggttgggtcacgcgttgatgtctttgacaggtctagtcaaagagcgcgaggaa
atccctcagagagatggaatagactggtactcagacattctataccacatagggacattg
ctgctggacagaaactcctttcatccccttggaatgtcacaaagttga
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