Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139377367
Help
Entry
139377367 CDS
T10872
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139377367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139377367
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
139377367
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
139377367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
139377367
NCBI-ProteinID:
XP_070976492
LinkDB
All DBs
Position
20:complement(28098175..28099838)
Genome browser
AA seq
245 aa
AA seq
DB search
MAGLELLSDQGYRLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRG
SRSKTLHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQ
IDIYVKILQSDGGNYSACVNAATLAVVDAGIPMRDYVCACTAGFVDETPLADLCHAEESG
GGTSLALALLPRGGHIALLQMDARLHQDHLETLMEAAMTACKGVSKVLDEVVRQHLQEVS
ALTGE
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctggagttattgtcggatcaaggatatcgtcttgatggaagaaaagctgct
gaactgcggaaagtacaagctcgtatgggtgtatttgcccaagctgacgggtctgcgtac
atagaacagggaaataccaaagcgctggcagttgtgtatggtcctcatgaagtgcgaggt
tcccgcagcaagaccctccatgaccgtgctgtcatcaactgccaatacagcatggctacc
ttcagtacagctgaaaggaagagaagaccccacggggaccgcaagtccacagagatgagc
cttcacctcaagcagactttcgaggcagcagtgttgactaatctgtacccacgctctcaa
atagacatttatgtcaagatcttgcagtcagatggaggaaactacagcgcgtgtgtgaac
gccgctactctggcagtagtcgatgcgggcatccccatgcgtgactatgtgtgcgcctgc
actgcaggctttgtggatgagaccccattggcagacctgtgccatgctgaagagagtggc
gggggcacatcactggccctggcattgttgcctcgtggcgggcacattgccctgctacag
atggacgcccgactccaccaggaccacctagagacactgatggaggctgcaatgacggcc
tgtaagggcgtcagcaaagtgttggacgaggtggtgaggcagcatctacaggaggtgtct
gcgctgactggagagtga
DBGET
integrated database retrieval system
