Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139377368
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Entry
139377368 CDS
T10872
Name
(RefSeq) voltage-dependent R-type calcium channel subunit alpha-1E-like
KO
K04852
voltage-dependent calcium channel R type alpha-1E
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010
MAPK signaling pathway
ocla04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
139377368
04020 Calcium signaling pathway
139377368
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139377368
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
139377368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
139377368
NCBI-ProteinID:
XP_070976493
LinkDB
All DBs
Position
20:complement(28542313..28641999)
Genome browser
AA seq
2469 aa
AA seq
DB search
MLTSSDKSLSLMPDHCAPVGLASGPKVCTTSRGMHGTRSSLSLPEPEAWRRTPMPSPGTT
RQGGLAQGSRSCSLQVPRSGLETLALPPRAASFDVPYRVEKAGSDTGSGSVSPCSMQRRR
GGIVDQKDVIRAHESHKMQSTPQARRKEWEMARFGEEVQMAMDSRDSGDPEHGEDGGDTA
SGTGSGTGSGTLKQTKAARARTMALYNPIPHRQNCLTVNRSLFIFAEDNFIRKTAKRIIE
WPPFEWVILATITANCIVLALEQHLPGEDKTPMAKRLECTEPYFIGIFCFEFGIKLVALG
FVFHKGSYLRNGWNIMDFIVVVSGILATAGAHMNIPVDLRTLRAVRVLRPLKLVSGIPSL
QIVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYSGKLHHTCLPTADILENETMDTTE
VEFACGVRKCPEKYDCIGSWIGPNNGITQFDNILFAVLTVFQCITMEGWTAVLYNTNDAL
GSMWNWMYFIPLIIIGSFFVLNLVLGVLSGEFAKERERVENRRAFMKLRRQQQVERELNG
YRAWIDRAEEVMLAEENKNSGRSALDVLKRATSKNAKHRGGPGDAEISTIGAPRMRIRTV
RRGPVAYIRRKERMLRISLRRMVKTDTFYWTVLSLVALNTICVAIVHHNQPEWLSTFLYY
AEFVFLGLFLAEMFLKMYGLGFRLYFHSSFNCFDCGVIVGSIFEVVWGFFRPGMSFGISV
LRALRLLRIFKITKYWASLRNLVVSLMSSMKSIISLLFLIFLFIVVFALLGMQLFGGRFI
FEDYTPANFDTFPAAIMTVFQILTGEDWNEVMYNGIRSQGGVQYGMWSSIYFIVLTLFGN
YTLLNVFLAIAVDNLANAQELTKDEEEEEEFFNARYARGRDGPMSERRRRPYLRRKKAIH
RGRMAVPEEEEESGAPGGADQPPNGANAFSNRRDRRRRGGGGGGGGGGGRGGRSVWEQRA
NQLRKRRQMESQEVLFGGSPTEDTTDNPTTAYRAPTRSPDTSPGHLPESPMSGIMPMPEP
PMSIAIRLPEPPDSEPRPLFTLVEERAVHHRPAGGDRRHRVARKFRPGLGGAEEGGVARH
RRHRHREARAEAKSRESPHEEVRESGSRDRKILEEREEKEEKEEKMDKEEVAVVEGGVSG
QEEGASIVNLESEEEHLRVCIADIPEPPLCDDFPESLPPPLLDPPPQMEEGEVGETGQCE
PLSQDPPLEPAPEQFTDPPELQAASGVNDSENNPASLNREEGEGPGQVLDSQTSVIIEMS
GEQPLLEIIPLTALHNNKEMEVYQPERKEKEKEKEEKEAQEEASPPKPVPPDSMFLFKAS
NPIRRICHYLVTMRYFEMTILLVIVASSIALAAEDPVCTNSDRNRVLRYFDYVFTGVFTF
EMIIKMIDLGLLLHDGSYFRDLWNILDFIVVVGALFAFALTNVIGNNKGRDIKTIKSLRV
LRVLRPLKTIKRLPKLKAVFDCVVTSLKNVFNILIVYKLFMFIFAVIAVQLFKGKFFYCT
DSSMDTEKECQGYYIDYARDKTEVKKREWKRHEFHYDNVCWALLTLFTVSTGEGWPQVLQ
HSVDVTEEDRGPSRGNRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEECSL
EKNERACIDFTISAKPLTCYMPQNRQTFQYRLWHFVVSPSFEYTVLVMIALNTVVLMMKY
NSAPAAYDTVLKHLNTAFTVLFSLECILKIMAFGFVNYFRDTWNIFDFITVLGSITEIIV
DLQSINTFNMSFLKLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYA
IIGMQVFGNIKLNDENHINQHNNFKTFSGALMLLFRSATGESWQEIMLSCLGGKECEPDS
SMAPMTMSPDHEGGCGTDFAYCYFVSFIFFSSFLMLNLFVAVIMDNFEYLTRDSSILGPH
HLDEFVRVWGEYDRAACGRIHYTAMYEMLTHMSPPLGLGKKCPRGMAYKRLVLMNMPVDE
DMSVHFTSTLMSLIRTALEIKIARGQGMSGEDRVALDTELQKEINVIWPYLPQKTLDVLV
PINKDSDMTVGKIYASMMIMDYFKQNKAKKLRAQLEAQKASLMPFKRLDASTLSEDILYN
AHPLPCMSLSAGSALTRGGLVALSPLSQDLFAMQPMTSDQDTSSQHSRVSLGEFSGLIPD
SLQLPFGKGLCVRASSMPRLAEEPQTEMASGSIKRSSSTVADQRVNGLWQEEKKSPDRLY
RPRHKSYKAAVSRSERKRQLDTEKERGRSKERRHLLSPDTSRCNSEERNLQPSCSPSRER
THPLDKQGNSSDSPIPTSESSTPSRRPLSQTPTRSHPHISYSPLVCRTHPPSGDDDDDRG
SPETQRWGEASREAGGEGQTGPRGRRHHHQQGSPLRRYPSEPYLTLQEDEHSPDPSRFME
TLTFEAAVATSLGRANTVSSSSSSSFSSARRGSRSGWQIPNGHFRKRLAQTVSVAGCEPL
SDTEEDGRC
NT seq
7410 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccagctcagataaatctctctctctgatgccagaccactgtgccccagtgggt
ttggcttccggtcccaaagtctgcaccaccagtagggggatgcacggcacccgctcctcc
ctctctctacctgagcccgaggcatggcgtcggaccccgatgcccagcccgggcaccacc
cgtcaggggggcctagcccaggggtcccgttcctgctccctgcaggttccccgctccggc
ctggagaccctcgctctacccccgcgggcagccagcttcgacgtcccttacagggtggaa
aaggccgggtcggacacaggctcggggtctgtgagcccctgtagtatgcagaggagacgc
gggggcatcgtggatcagaaggatgtgatcagagcccacgagtcgcacaagatgcagagc
acaccacaagcccgcaggaaagagtgggaaatggctcggtttggagaagaggttcagatg
gcgatggattctcgagactccggggacccggagcacggggaggacggcggggacacggct
tcaggtacagggtcagggacagggtcagggacgctgaaacaaaccaaagcagcgagggcg
cgcaccatggctctttacaaccctataccccaccggcagaactgcctcaccgtcaacagg
tcactctttatattcgccgaggacaatttcattcggaaaactgccaagaggatcatagaa
tggccaccgtttgagtgggtgatcctggcaaccatcacggccaactgcatcgttctggcc
ctggagcaacatcttcctggggaggacaagactcccatggccaaaagactggagtgtact
gagccttacttcatcgggatcttctgctttgagtttggcatcaagctggtggccctgggc
tttgtgttccataaaggctcctacctgaggaatggatggaatatcatggacttcatcgtg
gtggtcagcggaatattggcaacagcaggggcccacatgaacataccagtggatctgcgg
accctgagggcggtgagagtcctgaggccccttaaattggtctctgggatacccagcttg
cagatcgtgctgaagtccatcatgaaggccatggtgcccctgctccagatcggtctgctc
ttgttctttgccattcttatgttcgccatcatcggcctggagttctacagcgggaagctc
caccacacctgtctacctactgctgacatcctggaaaatgagacgatggatacgaccgag
gtggagtttgcctgtggagtgaggaagtgtccggagaagtatgactgcatcgggtcatgg
attggccccaacaacggcatcacccagtttgacaacatcctgttcgctgtgctcactgtc
ttccagtgcatcaccatggaggggtggacagctgtactctacaataccaacgatgccttg
ggctctatgtggaattggatgtactttattcctctcatcattattggctcattcttcgta
ctcaacctggtgttgggagtcctctctggagagtttgccaaagagagggagcgggtggag
aacaggagagccttcatgaagctgagacgtcaacagcaggtggagagagaactcaatgga
tacagagcctggatagaccgagcagaggaggtgatgctggctgaggagaacaagaattca
gggagatctgctttagatgtgctgaagcgggccaccagtaaaaatgctaagcatagagga
ggtcctggggatgcagagatctccactataggagcacctcgtatgcggatccgtacagtg
cggcgtggcccggtggcgtatatacgtcgtaaggagcgtatgctgcgtatctccctgcgg
cgcatggtgaagaccgacaccttctactggactgtcctcagcctggtggctctcaacacc
atctgtgtggccatcgtacatcacaaccagcccgaatggctctccaccttcttgtactat
gcggagtttgttttcctggggctctttttggcagagatgttcttaaagatgtacggcctg
ggattccgcctctatttccactcctccttcaactgcttcgactgtggagtgatagttggc
agcatctttgaggtggtgtggggcttcttccggcctggcatgtcctttggcatcagcgtc
ctgagggcactgagactcctgaggatctttaagatcaccaagtactgggcatctcttagg
aacctggttgtgtctcttatgagttccatgaagtccatcatcagtctgctcttcctcatc
ttcctcttcatcgtcgtcttcgccctgctgggcatgcagctctttgggggcaggttcatc
tttgaagattacactcctgccaactttgacacgtttccagctgctatcatgacagtgttc
cagattctgactggtgaggactggaatgaggtgatgtacaatggcatccgctcccaagga
ggagtgcagtacggcatgtggtcctccatatacttcatagtgctcaccctgtttgggaac
tatactctactcaatgtcttcttggccatcgctgtggataaccttgccaacgcacaggaa
ctcaccaaggatgaagaggaggaagaggagtttttcaatgcaagatacgccagaggcaga
gatggcccgatgtctgagaggaggaggaggccctatctccgcaggaagaaggccattcac
aggggccgtatggccgtccccgaagaggaggaggagagcggcgccccgggcggagctgac
cagccccccaatggggccaacgccttctccaaccgccgtgacagacggaggaggggggga
ggaggaggaggaggaggaggaggaggaagaggcggaagatccgtgtgggagcagagggcc
aaccagttacgcaagcggcgccagatggagagccaggaggtgctgttcgggggcagcccc
accgaggacaccactgacaaccctaccaccgcctaccgtgcacccacccgttccccagac
accagtcccggacacctgcccgagtcgcccatgtccgggatcatgcccatgcctgaaccc
ccgatgtccatcgccatccggctgccggaacctccggactctgagcctaggcctctgttt
acattggttgaggagagagcagtgcaccatcgacccgcaggtggggacaggaggcacagg
gtggcccggaagttcaggcctggccttgggggggcggaggagggaggggtggctcggcat
aggaggcaccgtcatcgtgaggcccgggctgaggccaagagcagagagtccccacatgag
gaggtcagagaatcaggcagcagagataggaagatactggaagagagggaggaaaaagaa
gaaaaagaggagaagatggacaaagaagaggtcgctgtggtggagggaggagtgtcgggc
caggaagaaggagctagcattgtcaacttagagagtgaagaagagcatctgagagtgtgt
attgcagacatcccagagcctcccctatgtgatgacttccccgagtccctacccccaccc
ctgttggaccctccaccccagatggaggagggcgaggtgggggaaactgggcagtgtgag
cccctgtctcaagaccctccattggagccagccccagaacagttcacagaccccccagag
ctccaggcagcatccggggtcaatgattcagagaacaacccagcctccctgaaccgtgag
gagggtgaggggccaggccaagtcctagacagccagactagtgtgatcatagagatgtct
ggagaacagccactgctggagatcatccctttgacagctttacacaacaacaaagagatg
gaggtgtaccagcctgaaaggaaggagaaggagaaggaaaaggaggagaaggaggcgcag
gaggaggccagcccgcccaaacctgtacctcctgacagcatgttcctcttcaaggcctcc
aatccgatcaggaggatctgtcactatttggtgaccatgcgctactttgagatgaccatc
ttgctggtgatcgtggctagcagcatcgctctggctgctgaagaccctgtgtgcaccaac
tctgacagaaacagggttctccgttactttgattacgtctttactggagtcttcactttt
gaaatgatcataaagatgattgacctgggcctgcttctgcacgacggctcctacttccgt
gacctgtggaacattctggacttcatcgtggtggtgggagctctgttcgccttcgctctg
acgaatgtgattgggaacaacaaaggcagagacatcaagaccatcaagtctctcagggtc
ctgagagtcctacgacctctgaagaccatcaagagactccccaaactcaaggcagtgttt
gactgtgtggtgacatccctgaagaacgtcttcaacatcctcatcgtctacaagctcttc
atgttcatcttcgctgtcatcgccgtgcagctcttcaagggaaagttcttctactgcaca
gacagctccatggacacagagaaggagtgccaaggttattacatagactacgctcgagac
aagacggaagtgaagaagagggagtggaagagacatgagttccactatgacaatgtctgc
tgggctctgctcaccctcttcactgtttccactggagagggctggccgcaggtgctgcag
cattctgtggatgtgacagaggaggacaggggtccaagtcggggcaacaggatggagatg
tccatcttctacgtcgtctacttcgtggtcttccctttcttctttgtcaacatttttgtt
gctctcatcatcatcaccttccaggagcagggggataagatgatggaggagtgcagcttg
gagaaaaatgagagggcatgcattgactttaccatcagtgccaagcccctgacctgctat
atgcctcagaacagacagactttccagtaccggctgtggcactttgtggtgtcaccgtca
tttgagtacacagtgctggtcatgattgccctcaacactgtggtgctcatgatgaagtac
aactccgctccggcagcgtatgatacagtattgaagcacctgaacacggccttcaccgtt
ctcttctccctggagtgtatcctcaagatcatggcctttggttttgtgaactattttcga
gacacttggaacatttttgatttcatcactgtgctcggcagcatcactgagatcattgtg
gacttacagtcaataaacacgttcaatatgagtttcctgaagctgttccgggctgccagg
ctgatcaagctgttgaggcagggctacaccatacggatcctgctctggaccttcgtacaa
tcctttaaggcccttccttatgtgtgtctgctcatcgcaatgctgttcttcatctatgcc
atcattgggatgcaggtgtttggaaacatcaaactgaacgacgaaaaccacataaaccag
cacaacaacttcaagaccttctccggtgcgctgatgcttctcttcaggagtgcgaccggg
gagtcatggcaggagatcatgctatcgtgtctggggggaaaggagtgtgagccagactcc
tccatggcacccatgaccatgtcccctgaccacgagggaggctgtggtactgacttcgcc
tactgctactttgtctccttcatcttcttcagctccttcctgatgctgaatctgtttgtg
gctgtgatcatggataactttgagtacctgaccagagactcttccatcctggggcctcat
cacctggatgagtttgtccgtgtctggggagagtacgaccgcgcagcatgtgggcgtata
cactacactgccatgtatgagatgttgacccatatgtctccaccccttggtctggggaag
aaatgccccagaggtatggcctacaagaggctggtgttgatgaacatgccagtggatgag
gacatgtcagtccacttcacctccaccttgatgtctctcatccgcaccgctctggagatc
aagatcgcacgaggtcagggaatgagtggggaggaccgagtagctctggacactgagcta
cagaaggagatcaatgtgatatggccgtacctcccccagaagaccctggatgtactggtg
cccatcaacaaagattccgacatgacagtaggtaagatatatgcctccatgatgatcatg
gactacttcaaacagaacaaagccaagaagctgagagcacagctggaagcacagaaggcc
agcctgatgccgttcaagaggctggatgcctcgactctctctgaagacattctgtacaat
gcccatcccctgccctgcatgtccctcagtgccggctccgccctgaccagaggaggcctg
gtggcgttgagtcctctctcccaggacctgttcgccatgcagcccatgacctctgaccag
gacaccagcagtcaacactccagggtgagtcttggggagttcagtgggttgattcctgac
tcactgcagctcccgtttggcaaggggctgtgtgtacgggcctcctctatgccccgtctg
gctgaagagccacagacggagatggccagtggctccattaagcggtcctcgtccactgtg
gctgaccagagggtgaatggcctgtggcaggaggagaagaagagtcctgatagactgtac
agaccacgccacaagagctacaaggctgccgtctcccggtcagaaagaaagaggcaattg
gacacagagaaggagcgcgggaggtccaaagagcgccgccacctcctctccccagacaca
tcccgctgtaactctgaggagaggaatctgcagccctcatgctcccctagccgagagcgc
acacaccccctggacaaacagggtaacagctccgacagccccatccccacctctgaatct
agtacccctagtcgccgccccctgtcccagaccccaactcgctcccatccccacatctcc
tactcccctctggtgtgtcgcacgcaccctccctccggggacgatgatgacgacaggggc
agcccagagacccagaggtggggggaggcctccagagaggcaggtggagagggacagacc
gggccaaggggtcgtcgccaccaccaccagcagggctcccctctgcgtcgctacccgtcg
gagccctatctcaccctgcaggaggacgagcacagtccggacccctccaggttcatggag
acactgaccttcgaggcggcggtggccactagcctgggacgcgctaacacggtcagctcc
agctccagctctagcttcagctcggcccgacggggctccaggagcggctggcagatcccc
aatggacacttccggaaacgcctggctcagaccgtctctgttgcaggctgtgagccactc
agcgacacagaggaggacggccgctgctag
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integrated database retrieval system
