Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139377395
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Entry
139377395 CDS
T10872
Name
(RefSeq) protocadherin-8-like
KO
K16499
protocadherin delta 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139377395
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139377395
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
FAM91_C
Motif
Other DBs
NCBI-GeneID:
139377395
NCBI-ProteinID:
XP_070976523
LinkDB
All DBs
Position
20:33630750..33634663
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AA seq
1006 aa
AA seq
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MGMRGWNWWVLVCTSLAVLPALTEGKTVKYETFEEDAPTTVIGNLAKDISISPSSGSKTN
FRMMKQFNSSFIRLRESDGQLTIGERIDRERICKHTLHCLIAFDVVSFSKEQFKLIHVEV
EVKDINDNSPEFPRKESSLEISENTAVGTRIPLDFAVDEDVGLNYIQSYQISVNSHFTID
VLSRADGVKYAELVLMKELDRETQASYALELVAMDGGNPSRTGTTRINVKVKDYNDNSPV
FDRNNFSVDLPEDAPVGFLLLDLNAEDPDEGLNGEVVYGFGNQVPSEIRQLFRVDRKTGR
LTLESPIDFESKKTYEFDVQATDLGPNPSPAICKIVVQVQDVNDNAPEISITPMTSITAG
IAYITESAARESFVALVSTSDRDSGANGQVHCTLYGHDHFRLQQAYEDSFMIVSTSPLDR
EQIPEYNLTVVAEDLGSPPFRTITQYTIRLMDENDNAPVFSKPVYEVAVVENNAPGAYIT
TVVARDMDLGHNSKVSYKLADAYVMGSPVSAFVSLDPASGSLYALRSFNYEVMKQLELRI
TASDGGFPPLTGIATVNIRIVDQNDNAPVINQPVLNNGSAEVLLPRDAPSGYIITRVEAQ
DADEGLNAELSYRLAFGEASVFSVNKATGEVYLNRVLSHGVDETLRVTVTVSDNGRPALT
TAATLHFLIIAGAPPSDRTVYRAGSREAGEHTQWDLSVVIIIVLAGSCTLLLLAIILIAT
TCNRRKRDKTGDDTDSYGEKETLERGKNNGDNPLLPLHGVVGGFEAHTFSSQPGFAGEHT
GSSDLCSASEDGSEAPCVYEPDSKPKGYSTLPGYGNGYNNGKEVVRPITIWKGNSYTTIS
ARDPAFSGKDSGKGDSDFNDSDSDISGTDLKKEGAPVPPMGGQSGLWACTSECKILGHSD
RCWSPSTVHANTGPSPVPTPTGQTLSSFNSLSKTASLPRDSLRRDNYYQAHIPKTTGLQS
VCEKVLHREYDYVLVTPPIPMRIQEISEITIPVYGPTTTRCPSNEV
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgggtatgagagggtggaattggtgggtgctggtgtgcacctcactggctgtcctgccc
gctctcacggagggaaagacggtgaagtatgagacatttgaggaggacgccccgacgact
gtcatcggaaacttggccaaggacatttcaatcagcccctcctcgggctccaagacaaat
ttcaggatgatgaagcagttcaactcgtcttttatccgtttgagggagagcgacggccag
ctgactatcggagagagaattgacagagagagaatttgcaaacacacccttcactgcctc
atcgcatttgatgtggtcagcttctccaaagagcagttcaaactcatccacgtcgaggtg
gaggtcaaggacatcaacgacaattcccccgagttcccccggaaagagtcgagtctggag
atctccgaaaacacagctgtgggcacgcggatcccgttagacttcgctgtggatgaggac
gtgggtttgaattacatccagagctaccagatatccgttaacagtcacttcaccatagat
gtgctcagcagagccgacggggttaaatatgcggagcttgtgctcatgaaggagctggac
cgtgagacacaggcttcctatgcgctcgagctggttgctatggatggtggcaacccgtcc
cgcactggaacgactcgcatcaacgtcaaggtgaaagactacaatgacaacagcccggtg
ttcgacaggaacaatttctcagtcgacctccctgaggacgcaccggtagggtttctctta
ctggacctgaacgcagaagacccggatgaggggctgaatggggaggtggtgtatgggttt
ggtaaccaggtgccatcagagattcgacaacttttcagagtggaccgcaaaacgggacgc
ctcacccttgagagccccattgactttgaaagcaaaaaaacgtacgaattcgacgtccag
gcgactgacctgggtccaaacccgagcccggctatctgtaagatagtggtgcaggtgcag
gacgttaacgacaacgcgccagagatctccatcacgcctatgacctccatcaccgcggga
atcgcctatatcacggagtctgcggcgcgcgagagttttgttgctctagtcagcacctcg
gacagggactctggtgctaacggacaggtgcactgcacgctctacggccatgaccacttc
aggttgcagcaggcgtacgaggacagcttcatgatcgtgagcacaagcccgttggaccgg
gaacaaatccccgagtataatctaacagtggtggcagaggacttgggttccccaccattc
cggaccatcacccagtacaccatccggttaatggacgagaatgacaatgcccctgtgttc
agtaagccggtgtatgaagtggctgtggtggagaataacgcaccgggtgcttacatcacc
acggtggtcgccagggacatggacttgggccacaacagtaaggtgagctacaagctcgct
gacgcctatgtcatgggctctccagtgtctgcttttgtctcactggaccccgcgagtggc
tccctttatgcactcaggagcttcaactatgaagtcatgaaacagctcgagctccgcatc
acagccagcgacggtgggttcccgcccctcaccggaatcgcgaccgttaacattaggata
gtggaccaaaacgacaatgcacctgtcatcaaccagcccgtgctcaataatgggtccgcg
gaggttctgctgccccgggatgcgccctcaggctacatcatcacccgggtggaggcgcaa
gatgctgatgagggcttgaatgcagagctgtcctacagacttgcctttggagaagcatcc
gtgttctccgttaacaaagccaccggagaggtctacctcaaccgcgtgctcagtcacggc
gtggacgagaccctgcgcgtgaccgtcacggtgagtgacaatgggagacctgcgctcacc
accgccgccacgcttcacttcctcatcattgcgggcgcccctccgagcgacaggaccgtg
taccgggcaggcagcagggaggcaggggagcacacacagtgggacctgtcagtggtgatt
atcatcgtcctcgcggggagctgcacgctcctgctgttagccatcatcctcatcgccacc
acctgcaaccggcggaaacgggacaagactggagatgacaccgactcgtacggggagaag
gagactctggaaagaggcaaaaacaacggcgacaaccctctgctgccgctccacggagtc
gtgggagggtttgaagcccacaccttctcgagccagcctggttttgccggggaacacact
ggtagcagtgacctgtgctccgcctcagaagatgggagcgaggccccgtgcgtctacgaa
ccggacagcaaacccaagggctactccactctgcccggctatggaaacggctacaataac
ggtaaagaagtggtcagaccaatcaccatctggaagggcaactcctacaccaccatctcc
gcaagagaccccgcattcagcgggaaggacagcgggaaaggcgacagtgactttaacgac
agcgatagtgacatcagtggcaccgacctgaagaaggagggagcaccagtaccccccatg
ggtggccagagtggtctatgggcgtgtaccagcgagtgtaagattctgggtcattctgac
cgctgctggagcccttccactgtccacgctaacaccggtccctcgcccgtccccaccccc
accggccagactctctcctccttcaacagtctctccaagacggcctcgctgccccgagac
tcgctccgacgggacaattattaccaggcgcacatccccaaaacaaccggcctgcagagt
gtgtgtgagaaggttctgcatagagaatatgactatgtcctggtcactcctcccataccc
atgagaattcaggagattagtgaaatcactatcccagtctacggtccgaccaccacacgg
tgtcccagcaatgaagtctag
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