Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139377410
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Entry
139377410 CDS
T10872
Name
(RefSeq) semaphorin-6B-like
KO
K06842
semaphorin 6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
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Gene cluster
GFIT
Motif
Pfam:
Sema
PSI
Motif
Other DBs
NCBI-GeneID:
139377410
NCBI-ProteinID:
XP_070976539
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Position
20:35010217..35055713
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AA seq
903 aa
AA seq
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MTTMAPPLMFLLLLLQLAHSSFPEEPGPLSYAPLEVVRRYPVFVGRAHRSSQRQELHIHT
VLQMNRTLYIGARDDLYRVELDNMSGDEIFYSKKRTWESNKNDIRVCRMKGKHEGECRNF
IKVLLSQHGELFVCGTNAFNPLCANYTRDTLEMVGETVSGMARCPYDPRHANVALFAEGS
LFTGTVTDFLAIDAVIYRSLGDSPALRTVKHDSKWFREPFFVSAVEWGPHIYFFFREMAM
EFHHLEKVMVSRVARVCKGDQGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNLLHATSP
ILNMNGRDVILGLFSTPPNSIPGSAVCVFDMQQLARVFEGRFKEQKSPESIWTPVSDELV
PKPRPGGCAVQGSQFSSSKTLPDEVLNFVKTHPLMDETIPLVGHRPWVVKTMGRYQLTAM
VVDTEAGPHRNRTVLFLGSTRGTVLKFLIVPSGDNSPTHSSVFLEEVEGFNPEKCGEDSV
QARQLLSLSLDRPSHTLLLAFPSCLVRLPTARCHLHSRCMKSCLTSRDPYCGWTRGSTCS
FLRPGTRLPFQQDIEYGNFSHLGDCGGVIQQSLLVEPESLVSLNLLVASAISAFTIGAML
SGLAVCWIMAHKPSNRRQASNSSQSSIQRRERGMLTSGGGMGGSVLSVTRQGGGDRPCSQ
GGETLFVMPNGWVKSGELDPGFLPTPEHTPQQKRRGLRLSDSGSGGWDNSQTYLAGSTMG
LASPCPLPCPPHPSTAVYLTTRLFQGGGGGRHGGEERGREGETPRQHYVCLSKPWGEKGR
SGTPKSALRKSAGEYVYPMTPQDSPNRRRVVSAPSAHMEFGEPLPLRWPPQEGYILSSQG
MVPAPPSSMPTPNGQQYVAQHHTPGLGRAQLRGELGRGELGELVDLSQLLSKKSSNERTH
NGQ
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccatggcccctcccctcatgtttctcctcctgctccttcaattggctcacagc
tctttcccagaggagcccggtcctctaagctatgctcccttagaggtggtgaggaggtat
cctgtgtttgtgggtagagctcatcgttcctcacagagacaggagctgcacattcacaca
gtgctccagatgaaccgcacgctctacataggagccagagatgatctgtatagagtggag
ctggacaatatgtcaggggacgaaatattctacagcaagaagcggacgtgggaatccaat
aagaatgacattcgggtctgtaggatgaagggaaaacatgagggggagtgtcgcaacttc
atcaaggtgttattgagccaacatggagaactgtttgtgtgtggaactaacgccttcaac
cctctatgtgcgaactacactagggacactctggagatggtaggagagacggtcagtggg
atggctcgatgcccttatgatcccagacacgctaacgtggctctttttgcagagggcagt
ctcttcaccggtactgtaacagactttctggcgattgatgctgtgatctatcgtagccta
ggcgacagccctgctctccgcaccgtcaaacacgactccaagtggtttagagaacccttc
tttgtgagcgcagtcgagtgggggcctcatatttacttcttcttcagggaaatggccatg
gagttccatcacctggagaaggtgatggtgtctcgtgtggcgagggtgtgtaagggggac
cagggtgggtctcagagggtgttggaaaaacagtggacatcgttcctgaaggccagactg
aactgctctgtcccaggagactcccacttctacttcaacctgctccacgccaccagcccc
atactcaacatgaacggcagggacgtcatactgggactgttctctacaccgcccaacagt
atccctgggtctgcagtttgtgtgtttgacatgcagcagttggctagggtgtttgaggga
agattcaaggagcagaaatctccagaatccatctggacacctgtatctgatgagctcgta
cccaaacccaggccgggtggctgtgcggtgcaggggtctcagttcagctcgtctaaaact
ctgccagatgaggtgttgaactttgtgaagactcatcccctgatggatgagaccataccc
ctggtggggcacagaccctgggttgtcaagactatgggcaggtaccagttgacagccatg
gtggtggacacagaagctggtccccatagaaaccgtacagtattgtttctgggctccacg
cgagggaccgtcctcaaattcctcattgtcccgagtggagacaactctcccacacacagc
agtgtgtttctggaggaggtggagggcttcaaccctgagaagtgtggagaggactctgtc
caggccagacagttgttgtctctgtccttggatcgtcccagtcacactctactgctggcc
ttcccttcctgtctggtcagactacccacagcacgctgccacctacactcacgctgcatg
aagagctgtctgacttccagagatccctactgtggctggaccagaggcagcacctgctcc
ttcctcagaccaggcacacggctgccttttcagcaagacattgagtatggcaacttctcc
catcttggagactgtggtggtgtcatacagcagagtctgctggtcgagccggagagtctg
gtctccctcaacctgctggtggcgtctgcaatctcggccttcaccatcggggcgatgcta
tcaggcctggccgtctgctggatcatggcccacaagcccagcaaccgacgccaagctagc
aactccagccagtccagcatccagcgccgggagagggggatgttgacgtcaggaggaggg
atgggaggatcggtccttagtgtgacccgtcagggaggaggggatagaccttgttctcag
ggcggggagaccctgtttgtgatgcccaacggttgggtgaagtcaggggagctggaccca
gggttcttgcccacgccagagcacacgccccagcagaagagacgcgggctcaggctttct
gattctggatcaggggggtgggacaacagccagacctacctggcagggagcaccatgggg
ctggcatccccttgccctctcccttgccccccacacccctccactgctgtctacctgacc
accagactcttccagggtggaggaggtgggagacatgggggtgaggagcgaggaagagaa
ggagagacgcctcgccagcactacgtgtgcctcagcaagccttggggggagaaggggagg
agtgggaccccaaagtcggcacttcgcaagtcagcaggggagtacgtgtaccccatgacc
ccccaggactccccgaataggaggagggtggtgtcagcccccagcgcccacatggagttt
ggggagcccctgcctctccgctggcctccccaggaaggctacatcctcagcagccagggc
atggtccctgcacctccatcctccatgccgacccccaacggccagcagtatgtggcccag
caccacacccccgggctgggcagggctcagctgagaggggaactggggagaggagagctg
ggggagctggtggatctcagccagctgctgagtaagaagagttccaatgagaggactcac
aacggccagtga
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