Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139377482
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Entry
139377482 CDS
T10872
Name
(RefSeq) rab11 family-interacting protein 4-like
KO
K12485
Rab11 family-interacting protein 3/4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139377482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139377482
Membrane trafficking [BR:
ocla04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
139377482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD-FIP
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
EF-hand_8
WD40_alt
EF-hand_9
ZapB
Motif
Other DBs
NCBI-GeneID:
139377482
NCBI-ProteinID:
XP_070976613
LinkDB
All DBs
Position
20:complement(52704202..52811926)
Genome browser
AA seq
1115 aa
AA seq
DB search
MEHTLMSSPLGYSDWDSERIPSHGFLLMDSDKGTMLPQRESDQTGLDFQKVNQGLSLSLE
ELFQENALNIDSLFRTSSYSGGDQILPWEGCQSNHSQDVPLGKPAEVLPLKDKIEEQNNV
SDSPLPGLLFSKMANLFRDISACDEQNPPVGDRVPVTCHRELITLSEHPSTVKVSDRTPD
TNTEASSLLIVHLLSEHSPFPSGPSPSDEVNPRGVYEKLLFPSLDQDRGQPPPLQGGETV
PPENGDKGLFLGPVTNLPTVSNITSEGLLESSLSHNTIPFDRPSLSPEVQVGSVPLLDLE
VPDCGPSLCPTHLDSPTCTGAPSDSTAEDSEQEHTLATTILTLSDHRGEGDLALLLNSSP
LIEPLLPKVLSDRDASILGHLPSGCSSDKNGSQDLMEDKIIFDVTKHEGEEEMALDQCNT
SDALRDEETWDLKLPEAIQGDGIPALKTEQSDEVRLADLDLFARTTDSFDGLVLEMNGSS
SESGWTSEQAVENLSLSKMVGSDSMPVVPIVNRREEDPSPLKAVFDALDQDGDGFVRIEE
FMEFAAAYGADQVKDLTKFLDPSGLGVISFEDFYRGITAISNGSTEPQLYDVHFSPGDGA
VGCPEEYDEQNEVTDSAYLGSESTYSECEMFTDEDSGALVQPEMHEDVETDSGIDATLHD
PEDSHNRFSLSSELHSLSLVTVIGREEEHFEDFGESNTSELLLDTTEEGTDGEGDSSHLQ
TLDQNNCSSLLLSPSAPTTLPASFQSYLREEALDFFCNQCHKQISRLEDLSTRLNFLEMN
SSSKRLSSKKVARHLRNSSMTLDSMGELSRDILDLADTDITEKVLLLERRAAELEKDSEA
SGEQHTRLRQENLQLVHRANALEEQLKEQELHAEDHFHQETRRHKDALSKLEWERSLELE
NLQARLQQLDEENSELRSCVPCYRANIERLEEEKRKLEDELEDVTERLNEELETRRKTSD
KLTHERHQNQKEKEHTQELIEDLRKQLEHLQLYKLEAEARRGLSPSAGLQEYQSRTREAE
LEQEIRRLKQDNRSLKEQNDELNGQIINLSIQGAKNLVTASFSESLAAEINSVSRGELME
AIRKQEDVNFRLQDYIDRIIVAIMESNPSMLEVKY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atggaacatactctgatgtctagccctctgggatattcagactgggattcagaacgcata
ccctcccatggattcctcctcatggattcagacaaaggaaccatgctgccccagagagaa
agtgatcagacaggtttggatttccagaaagtcaaccagggtctatctctaagcctggaa
gagctttttcaggagaatgccttaaatatagatagccttttcaggacctccagttactct
ggtggagaccagatcttgccctgggagggatgtcaatctaatcattcccaagatgttccc
ctgggtaaaccagcagaggtattgcctctcaaagacaaaattgaggaacaaaacaatgtc
agtgacagcccactacctgggctgttattctccaaaatggctaatttgttcagggacatc
tcagcctgcgacgaacaaaatccacctgtgggtgacagagtccctgttacctgtcacagg
gagctgataaccctcagtgaacatccttctactgtgaaggtttcagataggactccagat
actaacactgaggcgtcctctttgttgatagttcacctcttatctgaacactcccctttt
ccctccggcccttctccttcagatgaggtaaacccacgaggtgtctatgagaagctttta
tttccatctctggatcaggacagaggccaacctcctcccttgcaaggtggggagactgtg
ccacctgaaaatggggacaaaggtttattcctaggacctgtgactaatctgcccacagtc
agtaacattacctcagaaggtttacttgagagcagcctctcacacaacaccatccctttt
gaccgccctagcctatctccagaggttcaggtgggatctgtgcctttgctggatctggag
gttcccgactgtggccccagcctctgccctactcatctcgactcacctacctgtacaggt
gctccatcagattcaactgcagaggattcagagcaggaacacacgttggctactacaatc
ctgactctctcagaccacagaggtgagggggacttggccctccttctgaactcctcacca
ttgattgaacccctgttgccaaaggtactctctgacagagatgcttcgatcctgggtcac
ctgcccagtggctgtagctcagataaaaatggctcccaggatttgatggaagacaaaatt
atctttgatgttactaaacacgagggagaggaggaaatggctctggatcagtgcaatacc
tcagatgcgctacgtgatgaggaaacttgggacttgaaactacccgaggctatacagggt
gacggtattcctgctttaaaaactgaacagagcgatgaggtaaggttggcagacttggac
ctatttgccagaaccacagatagttttgatggcctggttctggagatgaatggttcgtct
tctgagtctggatggacaagtgaacaagcagtggagaatctgtcactctctaagatggtg
gggtctgactccatgcctgtggttcccatagtgaatcggagagaggaagacccgtcacct
ctgaaggccgtgtttgatgctctggaccaggatggggatggatttgtacgcattgaggag
tttatggagtttgctgctgcctatggggctgaccaggtgaaggatctgaccaagttcctg
gatcctagtgggctgggggtgatcagcttcgaggacttctatcgtggaatcacggccatc
agcaatggaagtacagagccccagctctacgatgtgcacttcagcccaggggacggagca
gtgggctgcccagaggagtacgatgagcagaacgaggtgacggatagtgcctacctgggc
tcggagagcacctacagcgagtgtgagatgttcaccgacgaagattcgggagccctagtc
cagccagagatgcacgaggatgtggagacggacagtggcatcgacgcaacgctgcacgac
cccgaggacagccacaacaggttctccttgagctcagagctgcacagcctctccctggtg
acagtgatcggcagggaggaggagcactttgaggactttggggaaagcaacacctcggag
ctgctgctggacaccactgaggaggggacagatggagagggagactcatcccacctccag
actctggaccagaacaactgctcctccctgctactctctcccagcgccccaactactctc
cctgcaagctttcagagctaccttagggaggaggcgctggactttttctgtaaccaatgt
cacaaacaaatctctcgcctggaggacctctccactcgcctcaatttcctagagatgaat
agctccagcaagaggctgtccagcaagaaagtagcacgacacctccggaacagctccatg
acgctggacagcatgggcgaactgtcccgggacatactggatctggccgacaccgacatc
actgagaaggtgctcctgctggagcgtcgtgcagcagagctggagaaggactcggaggcc
agcggggagcagcacacacggctccgccaggagaacctgcagctggtgcaccgggctaat
gccctagaggagcagctcaaggagcaggagctccacgctgaggaccacttccaccaggag
acccgccgccacaaagacgccctttccaagctggagtgggagaggagcctggagctggag
aacctgcaagctaggctgcagcagctggatgaggagaacagtgagctgaggtcctgtgta
ccctgttaccgtgccaacattgagagactagaggaggagaagaggaagctagaggatgag
ttggaggatgtgactgagaggctgaacgaggagctggaaacccgcaggaagacatccgac
aagctgacccacgaacgccaccaaaaccagaaggagaaggagcacacgcaggagctgatt
gaggacctgcggaagcagctggagcacctacagctgtacaagctggaggcagaggccagg
agggggctctctcccagtgccgggctgcaagagtaccagagccgcacccgtgaggctgag
ctagagcaggagatccgacgcctcaagcaagacaaccgcagtctgaaggagcagaacgac
gagctaaacggccagatcatcaacctgagcatccagggagccaagaacctggtgacggcc
tccttctccgagtcactggcggctgagatcaactctgtgtcccggggagagttgatggaa
gctatccgcaagcaggaggacgtcaacttccgactacaggactacatcgaccgcatcatt
gttgccatcatggagtccaacccctccatgctggaggtcaagtactag
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