Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378424
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Entry
139378424 CDS
T10872
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 2-like
KO
K05046
solute carrier family 6 (neurotransmitter transporter, GABA) member 13
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
139378424
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139378424
Transporters [BR:
ocla02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
139378424
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Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
139378424
NCBI-ProteinID:
XP_070976686
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Position
21:complement(6448318..6473463)
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AA seq
634 aa
AA seq
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MEEEMVGGTTPGGPVDSEAQKQSPEDAVQQERGKWANKTEFLLSMAGEIIGLGNVWRFPY
LCYKNGGGVFFIPYFVFLFFCGIPVFFLETALGQYTSEGGVTAWRKICPMFEGVGIASQV
IVAYLNIYYIVVLAWGLFYLFNSFRNPLPWSTCDNEWNTENCHNLSSMLLNPHLSQLDSD
WSFLHNQTEYNDYNMLSNETMKITSPEEEFWARRVLRTSDHVSLGAVHWDLALCLLLAWI
ICYFCIWKGVKSTGKVVYFTATFPYLMLFILFIRGVTLPGAGEGIKYYLWPQMDKILEPG
VWRDAGTQVFFSYAVCQGVLTSLGSYNKYNNNCYKDCVALCILNSATSIFAGFAVFSVLG
FMAYSLDLDMNEVVKGGPGLAFIAYPKAVSLLPGAQFWAVLFFLMVILLGLDSQFVCVES
LATSITDMFPGVLRRPGRREILVLVIAVVCFLLGLPLITENGIVLFQLIDSYGPSGTSLL
FIACFECIAVAWVYGANRFLDNIEDMIGYHPFPLVLKYCWLFVTPLICGITLVYDTLTSS
STNLNLEYAPEPWASRVASLLILTPLMCIPVYILLCLWRNPKGMTTASSDLRQARPHEPR
LTVCERVIIEGQEKPPRNAGDRDEKLAIEEISGV
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggagatggttggagggaccactccaggaggaccagtggactcagaggcccag
aaacagagccccgaggatgcggttcagcaggagaggggcaagtgggccaacaagactgaa
ttcctgctctccatggctggtgagatcattggcctgggcaacgtatggcgcttcccttat
ctgtgctacaagaacggaggaggtgtcttcttcatcccgtactttgtcttcctcttcttc
tgtggtatccctgtgttcttcctggagacggcattgggccagtacaccagcgagggcggg
gtcacagcctggaggaagatatgtcccatgttcgaaggagtgggaattgcatcccaagtg
attgtggcgtacttgaacatctattacatagtggtgctagcctggggtctgttctaccta
ttcaactccttcaggaatccactgccctggtccacctgtgacaatgagtggaatactgag
aactgtcataatttgagttccatgttgttgaacccacacctctcccagttggactcagac
tggtccttccttcacaaccagactgaatataatgactacaatatgttgagtaatgaaacc
atgaagatcacgtctcccgaggaggagttttgggctcgtcgggtgttgaggacgtcagat
catgtgtctctgggtgctgtacattgggacctggctctctgtctgctgctggcctggatc
atctgctacttctgcatctggaagggagtcaaatctacaggcaaggtggtgtacttcaca
gcaacgttcccctacctgatgctcttcatcctgtttatccgaggtgtgactctaccaggg
gctggagagggcataaagtactatctctggcctcaaatggacaagatcttggaacctggg
gtgtggcgtgacgcagggacccaggtgtttttctcctacgctgtatgtcagggggtcctc
acctctctgggcagctacaacaagtacaacaacaactgttacaaggattgcgtggcactc
tgcattctcaacagtgccaccagcatctttgctggattcgccgtcttctccgtactggga
ttcatggcttactcacttgacttggacatgaatgaagtcgttaaaggaggacctggtctg
gctttcatcgcctatcccaaagccgtgtccctgctaccaggggcccagttctgggccgtc
ctcttctttcttatggttatcttactgggtctggacagccagtttgtgtgtgtagagagc
ttggccacatccatcactgacatgttccctggtgtactgcggaggcctggccggagagag
atcttagtactagtcatcgctgtagtctgcttcctactgggtctgcctctcatcacggag
aatgggatagtcctctttcagttgattgactcgtacggccccagtgggaccagtctgctg
ttcattgcatgttttgagtgcatcgccgtcgcctgggtctacggtgcgaaccgtttcctt
gacaacattgaagacatgataggctaccatcctttccctttggtgctgaagtactgctgg
ctgtttgtgacaccactcatctgtgggatcaccctggtgtatgacacactgaccagttca
tcaaccaatctaaatctagaatacgcacctgagccctgggcctcccgagttgcctctctc
ctcatcctcaccccgctgatgtgtatccctgtctacattctgctgtgtctgtggaggaat
cctaaagggatgaccactgcgtccagtgacctgcgccaggcacggccacacgaacccaga
ctcaccgtgtgtgagcgtgtcattatcgagggacaagagaaaccccccaggaacgcaggg
gatcgggatgagaagctggccatcgaggagatcagtggagtctag
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