Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378504
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Entry
139378504 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM35-like
KO
K12012
tripartite motif-containing protein 35
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139378504
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139378504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_4
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
zf-RING_5
zf-RING_2
RING_XB3-XBAT31
zf-ANAPC11
U-box
zf-RING_6
TMEM214
Exonuc_VII_L
Rad50_zn_hook
PilJ
Motif
Other DBs
NCBI-GeneID:
139378504
NCBI-ProteinID:
XP_070976828
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Position
21:complement(9726809..9729430)
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AA seq
477 aa
AA seq
DB search
MAARFSLPEEDLCCPVCCDIFRDPVVLKCSHSFCAACLEQYWSGKGSARDCPLCRREFVD
EPVASLTLKNLCDSYIQESGALGPTGELCELGELCSLHGERLKLFCLQDKEPICLVCHTS
RKHKNHECCPVGEAIGDMKEEIKSVLTCLQEKKEAFDKMKQNYENTVTHIQIQARFVAKR
IHEEFETLHHFLQAEEAARLAALKEEEESKSEMLRQSMREMDRTLASLSDTIRAMEEEMA
LEDTFFLQKCKQTMRSVQSSTLQDPVMVPGALIDVAKYLGSLQYKVWEKMQGIVKYTPVT
LDPNTAAPWLLLSEDLTSVRDSDDKRKLPDNPERFDPDTGVLGSEGFSSGKHVWDVEVGE
NSAWVLGVAKESIQRKDKVSSVLKNGYLSVYFYHKMYFAGTSPLTRLNLKKSPQRIRVQL
DWEKGRVCFSDPTDNTQIYTFKHTFSERVFPYFWVGCKQCPLRIEPLEVSVKAVDHT
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcgattctctctcccagaggaggacctctgttgccctgtgtgctgcgatatt
ttcagggatcctgtggtcctcaagtgcagccacagtttctgtgcagcctgcttagagcag
tactggtctgggaaggggtcggcccgggactgccctctctgtaggagggagtttgtggac
gagccggtggccagcctcaccctgaagaacctgtgtgactcctacatccaggagagtgga
gcacttggacctacaggggagctgtgtgaactgggtgagctgtgctccctgcacggggag
aggctgaaactgttctgtctgcaggacaaggagcccatctgtttggtctgtcacacctcc
aggaagcataaaaaccatgagtgctgcccggtgggagaagctataggtgacatgaaggag
gagattaagtctgtgcttacttgtttgcaagagaagaaggaggcgtttgacaaaatgaag
caaaactatgaaaatacagtgacacacattcagatccaggcccggtttgtggcaaagagg
attcatgaggagtttgagacgctccaccatttcctccaagctgaagaggctgctaggctt
gcagctctgaaagaggaggaggagagtaagagtgagatgttgaggcagagtatgagggag
atggacagaaccctggcctccctctctgacactatcagagccatggaggaggagatggct
ttggaggatactttttttctccagaaatgcaagcagacaatgagaagtgttcagtctagc
acactgcaggacccagttatggtcccgggagcactcatcgatgtggccaagtacctgggc
tcacttcaatacaaagtgtgggagaagatgcaagggattgttaaatacacgccagtgact
ctggaccccaacacggctgccccctggctcctactgtctgaagacctcaccagtgtgagg
gacagcgatgacaaacgaaagcttccagacaaccccgagaggtttgaccctgacacaggc
gtactgggctctgagggcttcagctcaggaaagcatgtctgggacgtggaggttggagag
aacagcgcctgggtcctcggcgtagccaaagagtccatccagaggaaagacaaggtctcc
tccgtactgaagaatggatacctgtccgtgtacttttaccacaagatgtactttgccggg
acctcacccctgacacgactcaatctgaagaagagccctcagaggatcagagtgcagcta
gactgggagaaggggagagtgtgcttctctgacccaactgacaacacgcagatctacact
ttcaaacacaccttttctgagagggtcttcccctatttctgggttggctgtaagcagtgt
ccgctgaggattgagccattagaggtctcagtgaaagctgtagatcacacctga
DBGET
integrated database retrieval system
