Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378595
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Entry
139378595 CDS
T10872
Name
(RefSeq) transcription termination factor 1-like isoform X1
KO
K15225
transcription termination factor 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139378595
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
Transcription termination factors
139378595
BRITE hierarchy
SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
139378595
NCBI-ProteinID:
XP_070977010
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Position
21:13476354..13481920
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AA seq
768 aa
AA seq
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MSLLSTKKLRCYFPHLFNLIEKTGYAVATMLGTSTSTEQGARENPIVLEMCRISPLKFED
TPELISSVAPDTVEGFIKAKKNKALSEQGPEEPAIEHNQKDGHRLTVEKRGKDPKHKEQT
VTELEVVEKERKKRKKGNEEKQPNVIQDEMEVPDPEEQTGGKTKKKSKNLQTQQVGVDLV
IADENNMNSRKNKRKHNDIEPERVIDGVLSKAAVDVSAVTAPDETRKSKKKHKNRQTELE
EGAESCRTVSRTADDPKIIELHPEMVKRGKNVVTEAEENVKKRKRNKKKHTESELNDCPD
KADLPGIKEQTERKSKRPKTDVEVSGRKKKHRRESDKGMASVHSAADVLDLAVPNDNRTH
DAGTNGETEGAHSTMVETGTQHNKPCLKEETLGVDDWQALKDLKDFIPNVESKSVDEIHK
RIKYDLDRFKEFRRQGLSLRSGRFNAQENERLRSNVYDFLSLTGIQSGSELFHPQRFKEE
EANIKKLKRQHRFHERIGEGIPRPWHQIYIRGRKMFDGSNYKGRFTEEELHTLKKLQTLH
GNKWAKISALTGRSESALEKRFAQMSANKGAWTEEELKRLMEAVRKHLVGQAEPGSGPAT
VRKGQLYNNIPWTDVCQTVETRHWSQCRIKWLGVLKHKMAYGQPVFSGHTKSLQGKVDLI
KALNAMQVEDVADINWEEIAHTIGDVTPRYVQTHYYRLKVANVPLWQSMSFCEIIDFLNS
RVLPNCEERLKVLIKSGEVVSRNDPQELFLLSEIFDNDGDYYSDVQNS
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttttgtcaacaaagaagttacggtgttactttccccacttgttcaacctgata
gagaaaacaggttatgctgtagccaccatgctggggacttcaacatccactgaacagggg
gctagggagaatcccatagtgcttgagatgtgtcgaatatcccctcttaaatttgaagac
actcctgaattaatctcatcagtggcacctgatacagtcgagggattcataaaagccaaa
aagaataaagcactatctgaacagggaccagaagaaccggcaattgagcacaatcaaaag
gatggtcaccggttgacagtcgagaaaagaggtaaagaccctaaacataaagagcaaaca
gtgactgagctggaagtggtggagaaagagaggaagaaacgtaaaaaaggaaacgaagag
aagcagccaaatgttattcaagatgaaatggaggtaccagatcccgaggaacaaactgga
gggaaaacaaagaaaaagtcaaagaatcttcaaacacaacaggtgggagtggatttagtg
attgctgatgagaataatatgaatagccggaagaataagagaaaacataatgacattgag
ccagaacgggtgatagacggtgtcctctcaaaggctgcagtagacgtttcagctgtaact
gcgccagatgaaaccagaaagagtaagaagaaacacaagaacagacaaacagaacttgag
gagggagcggaaagctgtcggacagtttcaagaacagcagatgatccaaaaatcatagaa
ctgcaccctgaaatggtcaagagaggtaaaaatgtggtaactgaggcagaggagaatgta
aaaaaaaggaaacgaaataagaaaaaacacacagagagtgaactgaacgattgtccagat
aaagcagaccttccaggtataaaagaacaaactgaaagaaaatcaaagaggccaaaaaca
gatgtggaggtcagcgggagaaagaaaaaacaccgcagagagtcagacaagggaatggcc
agtgtccactctgcagcagatgttttggatttagctgttccaaatgacaacaggactcat
gatgctggaacaaacggtgagacagagggcgcccattcaaccatggttgagacagggacc
caacacaacaaaccctgcctaaaggaagaaactctaggtgtggacgactggcaggctctg
aaggatctcaaagacttcattcccaatgttgagtcaaagtctgttgacgagatccataag
aggatcaagtatgatcttgatcgattcaaggaattccgaagacaaggcctttccctgcga
agtggaagattcaatgcgcaggagaacgaacgactcaggagtaatgtctacgacttcctg
tctctcactgggattcagagtggctctgagctcttccatccacagcgcttcaaagaggaa
gaagcaaatatcaagaaattgaagaggcagcacagattccatgaaagaataggtgaagga
atacccaggccttggcatcaaatctatatacgtgggaggaaaatgtttgatggcagcaac
tacaagggcaggttcaccgaagaagagcttcacactttgaaaaaactacagacgttgcac
ggcaacaagtgggcgaagatctcggcgttgactggccgaagcgaatcggccctagagaaa
cgttttgctcaaatgtccgcaaacaaaggtgcgtggactgaggaagaactgaaaagacta
atggaagcggtgcggaagcacctggtgggacaggcagagcctggcagtggaccggccacc
gtcaggaaaggccagctgtacaacaacatcccctggacagatgtgtgccagacggttgaa
acgcgccactggtcccagtgtcgaataaaatggttgggtgttttgaagcacaaaatggca
tatggacaaccagtattcagtggacacacgaaatcattacagggcaaagtggatttgatc
aaagccttgaatgcaatgcaggtggaagatgttgcagatatcaactgggaagaaattgct
cacacaattggggatgttacgccgcgctacgtacagacacactactacaggctaaaggta
gccaacgttccgttgtggcagagcatgtccttctgtgagatcattgacttcctcaacagt
agagttctccccaattgtgaagagcgcctcaaagttctgataaagtcaggagaggtggtg
tccagaaatgatcctcaagagctcttcctactctctgagatatttgataatgatggcgac
tactacagcgacgttcagaacagctga
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