Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378735
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Entry
139378735 CDS
T10872
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139378735
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139378735
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
OVT1
Med14
Motif
Other DBs
NCBI-GeneID:
139378735
NCBI-ProteinID:
XP_070977282
LinkDB
All DBs
Position
21:complement(21000794..21030931)
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AA seq
1781 aa
AA seq
DB search
MLILHIASLLTLGWRSFAQLPEFGDVCTEGSCYPATGDLLIGRAHKLTASSTCGIEKPER
FCIVGHLEEEKKCFVCDSREKYDERMNHTTSHSIENLVTTFAPNRLKTWWQSENGVENVT
IQLNLEAEFHFTHLIMTFKTFRPATMVIERSMDFGEKWQVYRYYSYNCESAFPGISVGPM
VKVDDIICDSRYSDIEPSAEGEVIFRVLDPAFEIEDPYSPRIQNMLKITNLRVQFTKLHT
LGDNLLDSRDEVTEKYYYALFDMVVRGNCFCYGHASKCAPVDGIHVGTEGMVHGHCMCNH
NTEGLNCEHCKDFYNDLPWRPAEGRNTNACKMCECNHHSRSCHFDMAVYLSTGNVSGGVC
DECQHDTMGRQCEQCRPFYYQHPERHLRDPNICEPCSCDPTGSLQGGVCDGRTDVSAGLI
AGQCRCKTSVEGERCDHCRQGHYGLGQGPNGCLQCTCNPLGTLPGGSPCDMDTGNCFCKR
LVTGRNCDRCLPQHWGLSNDMDGCRPCDCDQGGAVNNDCSPISGQCQCREHMYGRRCDQV
ESGYYFIALDHYTYEAEEAKHGPGVTVVPRPYPLNRSPTWTGAGFVKVPEGAHLEFHINN
LPDSMDYDMLIRYEPQLPDQWEQVEIRVIRPYSMRVGQPASPCENTLQGGDQQLVSLLPG
SRHVLLPRPVCLEKGRNYTVRLSLPLYSSLSDVQSPYTLIDSLVLIPRVRELLLFEGSQG
EGAWDTFQRYRCLESSQSVIKSPMTDICNNYIFSVSALLHQGAMACQCDSQGSLSTVCDP
SGGQCQCRPNVAGRNCDRCAPATFLFSPLGCRSCECSPMGSVNAFCHEATGQCECVPGAS
GRQCAHCLPGYWGFPQCQPCQCNGNSDYCHPQTGECQGCRAFTTGHMCERCLDGYHGDPV
LGLGGHCRPCMCPDGPGSGRQYADSCYQTADNYQLVCACSPGYRGARCDECAPGHYGNPQ
VPSGRCLPCQCNDNIDQLDPGSCDARTGVCLKCLHHTEGYGCQRCKLGYYGNAASQSCRR
CMCYSVGTMSEACLSPGECHCDLQTGQCPCRPNVIGQNCDRCALDTFNIGSGKGCQTCDC
DPTHSFGTSCNELSGQCSCRSGFGGRKCNECRDKFWGDPEVKCQACDCDLRGIASEQCHR
SSGQCVCVEGVSGPRCNQCARGYHGTFPACERCHQCFAEWDRVVGELSNQTQRLKDHVTE
LQTSGVTAPYTDTVSSLEISANAISAIVENNPAIQKMEDVQQMMQQATELVADLNERLNV
SEDSLSRLVVNANDTEASLDALRKQAQELERSVTDIRDHIKTVKNSNIEGAMDTITKAHL
ESKRAEIRANQTTSYPDNTLEQSATLRREAEARLSQNQAEFDLRQQKHTERLERLATELN
TLDLSELSKKTCGAAGGEEGCAASPCGGVGCVSEDGNLRCGGEGCEGLVTQTQSTLKTAK
DFDQEILSTLQEVDKLSRMVWEVKVRAGEAKLNAEEVLLKSNQSRDRVEQSNEQLRSLIK
EIRGLLTNDRAKVEVIEAVSNEVLALEMPTSPEQLEALTKKIRDRVGTLTSVEDILSQSA
NDIHTAERLLEQARTASQEVSEMKETAALVKEALETTERAQNATIDAVKQAHNNTRGTLD
LITSVESETAESELRLSNATLRLLQLERDVTLLRESSLGTRHHTQHTERLSETARQDAEQ
ALQEFDLEVKGKYSVVEGLVVTKAEGVSDARKRAELLQQEAKELLTQSSVKLQRFRELER
SYAANQRTLEAKTVQLAGLEKTARQLLNDISQKVMVYSTCS
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgttgatattgcacatcgcatcacttttgaccctcgggtggcgctcctttgcccagctg
ccggagtttggggatgtgtgcactgaggggagttgctaccccgccaccggggaccttctg
atcggccgtgcgcacaagctcaccgcctcctccacctgcggcattgagaagcctgagcgc
ttttgcatcgttggtcacttggaggaggagaagaagtgttttgtgtgtgactcaagggag
aagtatgatgagaggatgaaccacaccaccagccacagcatcgaaaacttggtcactacc
ttcgcccccaaccgcctcaagacctggtggcagtctgagaatggggtggagaatgtgacc
attcaactgaacctggaagctgagttccacttcacacatctcatcatgacttttaagacg
ttccgtccggctaccatggtgatcgagcgttccatggattttggggagaagtggcaggtg
taccgttactatagctataactgtgagtccgccttccctgggatatccgtgggacccatg
gtcaaagtggacgacatcatctgtgactctcgctactctgacatagagccgtctgcagag
ggagaggtgatattcagggtgctggacccggcgtttgagattgaagacccttacagtccc
aggatacagaacatgctgaagatcactaacctgcgtgtccagttcactaagctccacaca
ctgggtgacaacctgctggactccagagacgaggtcacagagaaatactactatgccctc
ttcgacatggtcgtccgcggcaactgcttctgctacggacatgcctccaaatgcgcccct
gtcgatgggatacacgtaggcacagagggcatggtccatggtcactgtatgtgtaaccac
aacacagagggtctgaactgtgagcactgtaaggacttctacaacgacctgccctggagg
cctgcagagggacgcaacaccaatgcctgcaagatgtgcgagtgtaaccaccactctagg
tcatgtcactttgacatggctgtgtatctgtctacggggaacgtgagtggaggagtgtgt
gatgagtgtcaacatgacaccatggggcgtcagtgtgagcagtgcagacccttctactac
cagcaccccgaaagacacctgagagaccccaacatctgtgaaccgtgtagctgtgacccg
acgggctccctgcagggtggtgtttgtgacggcaggacagacgtgtcggctggtctgata
gcagggcagtgtcgctgtaagaccagtgtggagggagagcgctgcgaccactgtagacag
ggacactacggcctgggacagggaccaaacggctgcctgcagtgtacctgtaatcccctg
ggcacactgccgggaggaagcccatgtgacatggacacaggaaactgcttctgcaaacgc
cttgtcaccggcaggaactgtgaccggtgtctgccgcaacactggggcctgagtaatgac
atggacggctgcagaccatgtgactgcgaccagggcggagccgtcaacaatgattgttct
ccgatatcaggccagtgtcagtgtcgagaacacatgtatgggaggcgttgtgaccaggtg
gagtcaggatactacttcatcgccttggaccactacacctacgaggctgaggaagccaag
cacggccctggtgtgacggtggttcccaggccctatcctctgaaccgtagtcctacctgg
acaggggcagggtttgtcaaggtacctgagggagcccacctggagttccacatcaacaac
ttacctgactccatggactacgacatgctgattcgctacgaaccacagttgccggatcag
tgggagcaggtggagatcagagtgatacgtccgtactcaatgagagtggggcagccagcc
agtccatgtgaaaacacgcttcaaggaggagatcagcagttggtgtctcttcttccagga
tccagacatgtgctgctcccgaggcctgtgtgtctggagaaggggcggaactacactgtg
cgtctcagtctgcctctttactcctctctcagtgatgtccaaagcccctacacgctcatc
gactccttggtgttgattccgcgggtgcgtgagctgctgttgtttgagggttctcagggt
gagggggcgtgggatacgttccagaggtaccgctgtctggagagcagccaaagcgtcatc
aagagccccatgacggacatctgcaacaactacatcttcagtgtgtctgccctgctacat
cagggggctatggcgtgccagtgtgactcccagggctctcttagtacagtgtgcgacccc
agcggcgggcagtgccagtgtcggcccaatgtggcaggcaggaactgtgaccgctgtgcc
cccgccaccttcctgttcagccccttaggatgcagaagctgtgagtgtagtcctatgggc
tctgtgaacgctttctgccacgaggccacaggtcagtgcgagtgtgttccaggggcgtca
gggcgtcagtgtgcccactgcctgccaggctattggggcttccctcaatgccagccctgt
cagtgtaacggcaacagcgactactgccaccctcagactggggagtgccagggctgccgc
gccttcaccaccgggcacatgtgtgaaaggtgtctggatggttaccatggcgacccagtg
ttgggtttggggggtcactgccgcccctgcatgtgtcccgacgggccggggagcgggcgc
cagtacgcagacagctgctaccagaccgccgacaactaccagctggtctgtgcctgcagc
cctggatacagaggagccaggtgtgacgagtgtgccccaggtcactatggtaacccccag
gtgcccagcgggcgctgtctgccctgccagtgtaacgacaacatcgaccagctggacccg
gggtcctgcgacgctcgcacaggcgtctgcctcaaatgcctgcaccataccgagggctat
ggctgccagcgctgcaagctgggttactacggcaacgccgccagccagagctgcaggagg
tgtatgtgttattcagtgggcacaatgtcggaggcgtgtctgtctccgggggagtgtcac
tgtgacctgcagactggccagtgtccctgccggcctaacgtgattggccagaactgcgac
cgctgtgcccttgatacgttcaacattggaagcggaaagggctgccagacctgtgactgt
gacccaacccactcctttgggacgtcgtgcaatgagctgtcagggcagtgctcgtgcagg
tcaggtttcgggggaagaaaatgcaacgagtgccgagataagttctggggagaccctgag
gtcaaatgtcaagcgtgtgactgtgacctgcgtggcatcgccagcgagcagtgccaccgt
tcgtccggccagtgtgtgtgtgtggagggtgtgtctgggcccaggtgtaaccagtgtgcc
agagggtaccatgggacgttccccgcctgcgaacgatgccaccagtgctttgccgagtgg
gaccgcgtggtaggggaactgtccaatcagactcagcgtttgaaggatcatgtgacagag
ctccagaccagtggggtgacggcgccgtacacagacactgttagcagtctggagattagt
gctaatgctatcagtgcgatagtagagaacaaccccgctatacagaagatggaagatgta
caacagatgatgcagcaggccactgagctggtggcagacctgaacgagaggctgaacgtc
tcagaggattccctgtcccgtctcgttgtcaatgccaacgacaccgaggccagtctggac
gcactgagaaagcaggcccaagagctagagagatcagtcacagacattcgagaccacata
aagaccgtgaagaactctaacatagagggagcgatggacaccatcaccaaggcccacttg
gagtctaagagggcggagatccgtgccaatcagaccaccagttaccccgacaacactttg
gaacagtcagctacactacggcgtgaagcggaggccagactgagccagaaccaggcggag
tttgacctgagacaacagaaacacacagagagactggagaggctcgccacagagctcaac
actcttgacctatcagagctcagcaagaagacatgtggagcagctgggggggaggagggg
tgtgctgcgtccccctgtggaggggtggggtgtgtgtcggaggacggcaaccttcgctgt
ggtggggaggggtgtgagggtttggtcacacagacacaaagcactctgaaaacagccaag
gacttcgaccaggaaatcctctccaccctgcaggaagtggacaagctctctaggatggtg
tgggaggtgaaggtgcgtgcgggcgaggcgaagttgaatgctgaagaggtgctgctgaag
tccaaccagagcagagatagagtggaacagagcaacgagcagctccgcagcctcatcaag
gagatacgaggcctactcactaacgaccgtgccaaagtggaggttattgaagcggtttca
aatgaggtgttggccctggagatgcccacatcgcccgagcagctggaggccctgaccaag
aagatcagagacagggtgggaaccctcaccagcgtggaggacatcctcagtcagagtgcc
aacgacatacacactgcagagaggctgctggagcaggcccgcaccgccagtcaggaggtg
tctgagatgaaggagacagctgccctggtgaaggaagctctggaaacgactgagcgtgct
cagaatgctaccatcgatgccgtcaaacaggcccacaacaacaccaggggaacacttgac
ctcatcacatctgtggagtcggagacggcggagtcggagctgcgtctgagtaacgccaca
ctgcgtctgctgcagctggagagagacgtgactctgctgagagagagcagcctgggcacc
cgccaccacacacagcacactgagagactgtctgagaccgctaggcaggatgcagagcag
gccctgcaggagtttgacttggaggtgaagggtaaatacagtgttgtggagggcttggtg
gtgacgaaggcagagggcgtgtctgacgccaggaagagggcggagctactgcagcaggag
gccaaggagttgctcacccagtccagtgtaaaactacagagattcagagagttggagagg
tcgtatgcggccaaccagcgtactctggaggccaagacagttcagctggccgggctggag
aaaacggcacgccagctgctcaatgacatcagccagaaagtaatggtctacagcacctgt
tcttag
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