Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378778
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Entry
139378778 CDS
T10872
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ocla01001
]
139378778
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139378778
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139378778
Protein kinases [BR:
ocla01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
139378778
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139378778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_5
PHD-1st_NSD
PML_CC
Trm112p
PRANC
DUF1351
ParB
DUF5054
Motif
Other DBs
NCBI-GeneID:
139378778
NCBI-ProteinID:
XP_070977374
LinkDB
All DBs
Position
21:23865476..23880985
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AA seq
1150 aa
AA seq
DB search
MDESPEAAVDNDDLVIIVENEAESLPVEEERAKQLGGSIGLMDTCPVCKLNFHNREPKLL
PCLHSFCKKCLPPPSRNLVNTEQRRDPQLQADNSKPREILNVIRCPVCRQECWEVEVLDN
FFVKDSVEVPSSTVEKTSQVCMSCDDNTEATGFCVECVEFLCVTCIEAHQRVKFTRDHTI
RQKEEMSPEAVGASSQKPVFCDIHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDA
YRNHRQHLENMTHQLQEKRKAIEEVSNCINNGLQQVDENRKSVTNEIKKSICNLIMEINR
KGKILVNQLETLTKDHEVGLKKQQEDVSHLTRHLDHVINFTKWATASHSGTALLYCKRLI
LCQIHYLMRANCNASIVPQSSVRFQCRSGFWASNVDLGSLAVERIPGRQPSSMQQGFPPG
QPGPGPRGEGPPGAFPPGSSAHQRGSTLAQLQLQVEKLAQHPNRAGQPPPNHWSWYQQGL
KLPGPGGPPPQRPHQGGSPSQGPPNMVQIQQPGRSYGPPGPQTHPNPRSPTSMLQNAGFP
PQSLRDLIHNSSFPPKPMDVLQGTSRYSHAPPPNTGPISTQASIHQRNMMEAAQLRRSDP
SGASSSLSMPNPRASYAPSLATAFPDRHAQGRQNSPMSKSSSETNIGSASWKRTEPNAVA
PPSSAKRRRRSSPGPIIVIKDEPEDDDEVSFVQSSVGASASLPDSSTGIQPKPQPQQQSL
PAPMVEPQPEPQPEPQPQPEPQPQPEPQPEPQPETQPETQVELEADPQPDPEKAPCVPED
DPNEDWCAVCQNGGELLCCDRCPKVFHLNCHIPTLRESPSGEWFCSFCRDLTSPEMEYNP
DSQVELPAMKEEPGSEGFPPVDKRKCERLLLCIYCNEFSTDFQEPASPSSIPEYKELIET
PMDLSIVKSRLESKESPRYCSAEEFVKDVRLIFRNCAKYYQADTEVGGAGLSLEEYFEEQ
LKFLYQDRSFPGGREEGMIPPVEDEMEEGMEDDGMAPNEGDMPPVEDDLTPVEEGMPSME
KEGTEEGMDLVEGEMEEEGIPPLEESMEEEETSPVKEDSLPCDATEPVDPSIRGASSPNL
SSKEAPQPLSDTPDNPPCEEAPQPLSDTPDNPPDSQGTSTADSQDTSPAAGLATENEGMT
EEVRDKAEEE
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagcccagaagctgctgtggacaacgatgaccttgttattatagtggaaaac
gaggcagagagcttgccagttgaagaggagagggcgaaacagctaggaggtagcatcggt
ctcatggacacttgccctgtctgtaagttgaatttccacaatcgagagccgaaacttctg
ccatgcctccactctttctgcaagaagtgtcttccacccccttcaaggaacttagtcaac
actgaacaacgtcgcgacccgcaacttcaagcggacaactcgaaaccacgtgagatcctc
aatgtgatccgctgcccagtttgtcgacaagagtgctgggaggtggaggtgctggataac
ttctttgtgaaggactctgtggaggttcccagcagcacagtggagaaaaccagtcaggtg
tgtatgagttgtgatgacaacaccgaggccacagggttctgtgtggagtgtgtggagttc
ctgtgtgtgacgtgtattgaggcccaccagagggtcaagttcaccagggatcatactata
cggcagaaggaagagatgtccccagaggctgtgggtgcgtcctcacagaagccagtgttc
tgtgacatccacaagcaggagcccctcaaactgttctgtgagacctgtgaccgtctcaca
tgcagggactgtcagctgctcaagcacaaagaccacaattaccagttccttgaagacgcc
tacagaaaccacaggcaacacctggaaaacatgacgcatcagctacaggagaagaggaaa
gccatagaagaagtgtccaattgcatcaacaatggactccagcaagtcgatgaaaaccgc
aagtctgtcaccaatgagataaagaagtcaatttgcaacttgatcatggagatcaacaga
aagggaaaaatcttggtcaatcaacttgagacactgacgaaggaccatgaggtcggacta
aagaaacaacaagaagatgtcagccacctgaccagacatctagatcacgtcatcaacttc
accaagtgggccacagccagtcacagtggcacagctctcctgtactgcaagagactgatt
ctttgccaaatccattacctaatgagggccaactgtaacgcatccatcgtccctcagagc
tcagtccgcttccagtgtcgctccggtttctgggcctcaaatgtcgatctcgggtctttg
gcagtagagagaatccctggtcggcagcccagttccatgcagcagggcttccctcctggc
cagcctggccctggccccagaggagagggccctcccggggctttccctccaggctcctcc
gcacaccagcgtgggagcaccctggctcagctccagctgcaggtagagaagcttgcccag
caccccaacagggctggacagccccctcccaaccactggtcctggtaccagcagggtctg
aagctcccggggccagggggcccccctccacagaggccccaccaggggggttctccgtcg
caaggtccccccaacatggtccagatccaacagccgggccggagttacggaccccccggg
ccccaaacccatcccaaccccaggagccccacctctatgctgcaaaacgcaggattccct
cctcagtctctgagggatctcatccacaactccagctttcctcccaaaccaatggatgtg
ttacagggtacctctcgctactctcatgcaccccctcccaacacaggacccatcagcact
caagcctctatacaccagcgtaacatgatggaagccgcacaactgaggaggagtgacccc
agtggagcttcatcatcattatccatgcccaaccccagagctagttatgctccgagccta
gctactgccttcccagacagacatgcacaaggaagacagaattcccccatgtccaaatct
tcctctgaaaccaacatagggtctgcttcctggaagcgcacagagcctaatgcggtggct
cccccctcctcagctaagcggaggcgaaggtcatcccccggaccaatcatcgtcatcaag
gacgaaccagaggacgatgacgaagtcagctttgtgcagtctagtgttggagcctcagcc
agcctgccagacagcagtacaggcatccagcccaagccccagccccagcagcaatctctc
ccagcacccatggtggagccccagccggagccccagccggagccccagccccagccggag
ccccagccccagccggagccccagccggagccccagccagagacccagccagagacccag
gtagagctagaggcagacccccaaccagacccagaaaaggccccatgtgtccctgaagac
gaccccaatgaagactggtgcgctgtgtgtcagaatgggggagaactgctctgctgtgac
cgatgtcccaaagtcttccatctgaactgtcatatacctacacttagagagtctcccagt
ggtgagtggttctgttcgttctgtcgtgacctgaccagtcctgagatggagtataaccca
gatagccaggtagaattgccagccatgaaggaggagccaggatcagagggattccctcca
gttgataaaaggaaatgtgagagactgttgctctgcatctactgcaacgagttcagtaca
gatttccaggagcctgcctcaccgtcgtcaatcccagagtataaggagctgattgagact
ccaatggacctgtccatagtgaagagcaggctggaatctaaggagagcccgcgttactgc
agtgctgaggagtttgtcaaggatgtcaggctcatattcaggaactgtgcaaagtattac
caggcagacactgaggtgggaggtgcaggactgagcctggaggagtactttgaggagcag
ctgaagttcctctaccaagacaggagcttccctgggggcagagaggagggcatgataccc
cctgtggaggacgagatggaagaagggatggaagacgatgggatggctcctaacgaaggg
gatatgccccctgttgaggacgacctaacacctgttgaagaagggatgccttctatggag
aaagaaggaactgaagaggggatggatcttgtggaaggagagatggaggaagaagggata
cctcctttagaagagagcatggaagaggaagagacttctccagtgaaagaagactcacta
ccttgtgatgctactgaaccagtagatccatcaataaggggtgcatcatctcccaacctt
tccagcaaggaggctccccaacccctctcagatactccagacaaccctccctgcgaggag
gccccccaacccctctcggataccccagacaaccctcctgactcccagggcaccagcact
gctgactcccaggacaccagccctgctgcaggcttagccacagaaaatgaggggatgact
gaagaagtgagagacaaagcagaagaggaatga
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