Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378814
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Entry
139378814 CDS
T10872
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139378814
04518 Integrin signaling
139378814
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139378814
09142 Cell motility
04820 Cytoskeleton in muscle cells
139378814
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139378814
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139378814
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139378814
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139378814
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139378814
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139378814
NCBI-ProteinID:
XP_070977434
LinkDB
All DBs
Position
21:27527269..27693897
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AA seq
1690 aa
AA seq
DB search
MKFWICVLAVSWAVEATFGGTTGEPCNGLDCSGGCNCNPEKGSRGRPGALGPVGPSGPEG
FPGDQGPSGPKGEKGHVGLGGPSGLKGEKGPMGVPGFPGTDGVPGHPGADGGRGLPGADG
CNGTQGEPGPRTLNSGIPGVPGLSGPTGPKGQKGEPVYVGLSGGVPGPDGVPGPRGPDGG
PGDFGPRGPDGFLGAPGPPGPPGPVGSPSLGFQGEPGDKGDVGPQGDPGRPLVNGVVEFV
GFPKGDKGPKGEGGYKGVRGPTGRPGPPGPFGFPGEVGESGILGYPGGRGPPGFNGPPGS
PGRQGFTGSPGFPGQPGYRGPKGDQGEQGPPGPPIYTDAQGMSVQGAPGDNGIDGLPGQP
GDAGAPGFPGQPGRPGDSFGDGRGSSPGFPGTPGPKGERGNPGRQSYGPEGQPGGQGLPG
TPGPPGPPGRSVANIQTDLFDNLPGTPGRPGAQGPPGASGYKGPKGELGDCNCLGEGTSG
GVGPPGAPGSDGRPGGFGRKGESGDPGIPGFGGQPGTPGRAGERGFFGRKGEKGASFYPS
FSRGIKGELGALGPQGPPGDMGRPGRDGLPGFPGQPGPPADVDGYGTVGERGFPGFSGAK
GRAGEPGENGIGYQGTIGTRGLPGDPGFTGLPGQPGLPGPPGDSCGQEGVNDAEGGLTVP
CRLPGEDGEPGYPGIPGRTGPKGEPGFPGGPGRPGFDGGKGERGDPGFGGQPGPQGFPGP
RGDAGVPGIPGEGRPGAPGKNGFLGRPGEKGQPGEVLGASTGLPGSPGFPGGPGDKGERG
ASGPPGGPGFDGRSGVSGAKGERGTEGYPGTPGLPGLPGEGRPGGFPGPAGPAGSRGLTG
PPGYPGVKGARGDAGFPGPAGMKGQPGEPGGDGSPGLRGLPGPPGPGGRDGIPGGPGRKG
ESGYPGLVGFPGMPGNPGRPGGPGGKGAPGFSGRDGLPGDFGGPGPKGDRGNAGPPGAPS
LPVRVEYIEKGQMGDNGANGLPGFPGPRGDKGFPGLPGRQGLPGLPGYADRAKGEQGLPG
IPGRPAGPGYPGPKGSPGIIGFPGMPGPRGDDGEPGFPGNPGVLGQPGAKGERGDSSGYP
GGPGAKGEAGTPGYSGDPGAKGAPGDNGFAGGPGFNGQKGAPGDRGIPGQMGTPGFTGAK
GLNGYPGGRGLDGTPGRSGFPGTPGEKGLPGSPGLDGLNGLAGPKGLPGTPGYSEGGRPG
TPGAAGLKGERGSSIPGGPGYNGEKGARGESGGPGVTGFPGLPGLRGETIISNIPGPLGD
PGLSGIDGEEGYRGPPGPPGPPGPGTAQGDRGDSGLSGIPGTPGNRGDPGGPGGPGRDGN
PGFKGERGDSGYSGASGQMGFPGDPGYYGGKGPKGRRGDTGRKGPQGITFPRPDSPTPYG
DMGDPGNNGTPGSMGEAGNPGMPGRGGPKGRPGAVGKQGRNGGSGLDGPLGDSGPPGFPG
PTGSQGLPGKPGLQGPTGSVARSRSIGYTLVKHSQNNQVPMCPQGMAQLWEGYSLLYVEG
QEKAHNQDLGMAGSCLPRFSTVPFLYCTPNEICYYASRNDKSYWLSTTAPIPMMPVGEEA
ISQYISRCSVCEAYSQPVAVHSQDLTIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQSLSS
PGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVEPNREFDPPPMDTLKGGNQRSRV
SRCQVCSKIL
NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgaaattctggatttgtgtactcgctgtcagctgggcagtagaagcgacattcgggggg
acgacaggagaaccgtgtaatgggttggactgtagtgggggatgcaattgtaatccagag
aaaggcagcagggggcgtccaggggccttggggccagtaggacccagtggaccagagggc
ttcccaggtgaccaagggccttcagggcccaaaggagaaaagggtcatgtcggactcggg
ggcccctctgggctgaaaggagaaaaggggcctatgggcgtccctgggttcccaggaacc
gacggagtcccaggtcacccaggtgcggacggtggcaggggtctaccgggagcagacggg
tgcaacggtacccagggagaaccaggtcccagaactctaaacagtggaatacctggagtt
ccaggactctctggtcccactggtcctaaaggacagaagggagagcctgtatacgttgga
ctcagtgggggagttcctggaccggatggtgtacctggtcctagaggtccagacggaggt
cccggtgacttcggccctcgaggtcctgatggattcctgggtgctccaggcccccccggt
ccccctggccctgtagggagccccagtctagggtttcagggggagccaggagacaagggc
gatgtgggcccgcagggagacccaggcaggcccttggtcaatggagtggtggagtttgtg
ggctttcctaaaggagacaaaggacctaagggggaagggggttacaaaggagtgcgtgga
ccaactggtagacctggcccacctggtcctttcggctttcctggcgaggtgggagagagt
ggaattttggggtatccagggggacggggtcctcctggttttaacgggcctcccggatct
ccaggaagacagggattcacaggaagtccagggttccctggccaaccaggctacagagga
cctaagggtgaccagggagaacaggggcctcccggacccccgatctacactgacgcacaa
gggatgtctgttcaaggagcaccaggtgacaacggcatcgacggcctccctggccaacca
ggggacgcgggagctccagggtttccaggacaaccaggacgaccaggcgactccttcggc
gatggtcgcggaagcagcccagggttccctggtacaccggggcctaagggagagaggggt
aacccaggcagacagagctatggtcctgagggccaaccaggaggacaaggcttaccagga
acccctggaccacccggaccaccaggcagatctgtagccaacatccaaaccgacttgttc
gacaatctaccaggaacgccaggacgaccaggagcccagggaccacctggagccagtgga
tataagggacccaaaggggagctgggtgactgtaactgcctgggagaaggcacctcgggt
ggggtggggccaccgggtgctcctgggtctgatggaagacctggggggttcggacgtaaa
ggcgagagcggagaccctggcatacccggtttcggaggacaaccaggaacacctggtcgt
gcgggtgagaggggtttctttgggcgtaaaggagagaagggggcctccttctacccgtcg
ttcagccgggggatcaagggtgaactgggggccctgggtcctcagggcccccctggagac
atgggccgacccgggagagatggactgcctgggttccctggacagcctgggcctcctgct
gatgtcgatggctacggaaccgtcggagagagaggtttcccagggttctcgggggccaaa
ggtcgcgcgggtgaaccaggagagaatgggattggctaccagggtaccatcggtacccgc
gggttgccaggcgacccgggcttcaccgggttaccagggcaacctggtttacctggcccg
ccaggtgacagctgtgggcaggagggggttaatgacgcagagggagggttgacggtccct
tgtcgtctacctggcgaggacggagaacccggctacccaggaatacctggaagaacaggt
cccaagggcgagccaggtttcccagggggtcccggtcggcccggctttgatggagggaag
ggagagaggggagaccctggcttcggaggtcagcctggaccacaaggtttccctggcccc
agaggagatgcgggcgtcccaggtatcccaggcgagggccgtccaggggccccagggaaa
aacgggttcctggggaggccgggggaaaaggggcagccgggggaggttctgggggcctca
acaggtctccctggatcacctgggtttcccggaggaccaggagacaagggagagcgagga
gcatcgggaccacctggaggaccaggttttgacgggcggtccggtgtttccggcgctaag
ggtgagcgtggtacagaaggctaccccggaactccaggtcttcctggacttcccggagag
ggcagaccgggtggatttcccggtcctgccggaccagccggaagcagaggattaaccgga
cctccaggctaccccggtgtgaagggagccagaggtgatgcaggctttccaggcccagct
gggatgaagggacaaccaggagaaccaggaggcgatggctctccaggactcaggggtctt
ccaggaccaccgggccccgggggaagagacggcatccctgggggaccaggaagaaagggc
gagagcggttaccccggactggtgggtttccccggaatgccaggtaaccctggaagacct
ggaggtcccggagggaaaggagctcccggattctcaggaagagacggtctgcccggagat
ttcggagggccgggacctaaaggtgacagaggtaacgctggtccacccggcgcaccctct
ctgcccgtcagagttgagtacattgagaagggacagatgggcgacaatggtgccaacggt
ctacccggtttccctggacctagaggtgacaagggtttcccagggctgcctggtcgacag
ggtttgcccgggctgcctggttatgctgacagggctaaaggagaacaaggacttcctggt
atccccggacgcccagccgggccaggctacccagggcctaaaggatctcccggcatcatc
ggcttccctggcatgcctggacctaggggtgacgatggcgaacctggtttccctggaaac
cccggagtccttggtcagccaggtgccaaaggtgagagaggtgactcgtccggctacccc
ggaggtcccggagctaaaggtgaggccggaacccctggttactcaggcgacccaggtgct
aaaggcgcccccggggacaacggtttcgcaggcggccctgggttcaacggacagaaggga
gcaccgggagatcgaggaatacccggacaaatgggtacccctggtttcaccggcgctaag
ggtctgaacggatacccaggaggaagaggtctagacgggacgcctggccgctccggcttc
cctggaacacctggagagaaaggtctgccgggatctcctggtcttgatgggctcaacgga
ctggccggacccaagggtctaccaggaaccccaggttatagtgaggggggtcgtcccggc
actcctggagcagccggtctgaagggagagaggggctcctccatcccaggtggacctggg
tacaacggagagaagggagctagaggagagtcagggggtcctggtgtgacgggcttccca
ggactgcctggtcttcgtggggagacgatcatttctaatatccctggaccactgggagac
cctggcctgtcaggaatcgatggagaagaaggttaccgtggtcctccaggccccccaggc
ccaccggggcccggtacagcccaaggggacagaggcgactctgggctctctggcatccct
ggtacccctggtaaccgtggagaccctgggggtccaggtggcccaggacgggacggaaac
cctggattcaaaggggagagaggtgactctgggtacagtggagcatcaggacaaatgggc
ttccctggagatccaggatactacggtgggaaaggacccaaaggaaggagaggtgatact
ggtcgtaagggaccccaaggtataactttccccaggccggacagtccaacaccctatgga
gacatgggagaccccgggaacaacggaactccagggtccatgggagaagcaggcaatccc
ggcatgccaggcagggggggtcctaaaggcaggcccggcgcggtagggaagcaggggagg
aacggagggtcaggcctggacggacctctgggagactctggtcctcctggtttccctgga
cctaccgggtcacaaggtctgcccggtaagcctggactgcagggtcccacaggtagtgtg
gcgcgcagcaggagtattggctacactctggtgaagcacagtcagaacaaccaggtgccc
atgtgtcctcagggcatggctcagctctgggaaggatacagtctgctgtatgttgagggg
caggagaaggcccataaccaggacctcggtatggcaggctcctgccttccccgtttcagc
actgtcccgttcctgtactgcacgcccaacgagatctgctactacgccagccgcaacgac
aagtcctattggctgtccaccacggcacccatccccatgatgccggtgggagaggaggct
atcagccagtacatcagcaggtgctccgtgtgcgaggcctactcccagcctgtagctgtc
cactcacaggacctcaccatccccacctgccctgccggctggaggtccctctggatcggg
tactcctttctcatgcacactgctgccggggctgagggcggcggccagtccctgtcctct
ccagggtcctgtctggaagacttccgcgccacgcccttcatcgagtgtaatggggccaag
ggcacctgccactactttgccaacaagtacagcttctggctgaccacggttgagcctaac
cgggagttcgacccccctccgatggacacactgaagggaggcaaccaacgcagccgagtc
agtcgctgtcaagtctgcagcaagatcttgtag
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