Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378815
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Entry
139378815 CDS
T10872
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139378815
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139378815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139378815
NCBI-ProteinID:
XP_070977438
LinkDB
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Position
21:complement(27429888..27526454)
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AA seq
1683 aa
AA seq
DB search
MNKNLKSLRNLAVGLVLVTLCIMVQESESAACHGCAAGSKCDCSGVKGGKGERGFPGLQG
QPGVPGFPGPEGPIGGRGEKGGDGPSGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG
PRGTAGCNGTKGERGFPGSPGFPGLEGRSGPPGLPGQKGDLGDVISNDRFGQKGGVGLPG
LPGVPGNTGPAGLSGPVGPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGDKGDPGLQGP
PGPPGQVGEQKRPTELEIQRGEKGDQGLPGPAGDPGYTGPPGVSGGSKGEKGEPGEAGKR
GKPGKDGDPGPAGFPGSKGDLGGPGLPGRDGDRGDKGDRGYPGPPGVVINGQTGARVGPK
GEPGFPGSSGRKGDRGQPGLSGPPGQPGTPGTGGVGQPGSPGFPGERGQKGDEGQPGISL
PGPPGRNGTPGLQGPPGPPGAAGVSTGGGNCLGGAPGLPGQQGDRGFQGETGQKGDKGET
CVNCFSRGNSIPGAPGPPGPPGFPGGPGGPGAKGDRGYPGGPGPSGSSGLPGPQGAPGFP
GEKGDPGEAIAVDGVRGDKGDTGFPGPPGLPGLDGGPGRNGVPGAPGPKGTSGSLLVKGE
RGPPGEPGLQGLPGDRGGPGSPGFGPQGPPGEKGVQGVSGRTGTPGSPGTKGEPGQTIAE
KGLPGPRGQDGDPGLPGNPGNPGGPGQPGFPGLPGAKGDPGLSGIGLPGPPGAKGFPGSS
GVPGGPGGPGRPGVDGLPGEPGGPGAKGEPGFGLPGPQGPPGFPGPKGLPGPKGDSGFPG
NPGSPGRSGFDGGPGAKGDSGIPGISGARGPPGSPSIGSQGIPGPIGPPGPMGSPGYSGA
NGEKGDPGSPGLDIPGLPGDRGSPGFPGNPGGVGPQGNPGGPGRDGLPGLPGGKGDMGVM
GAPGPLGSPGNPGAPGFPGPKGDDGFPGRPGGPGGSGLKGDRGEPGIAGLPGPSIPPQEL
KGGKGEPGAPGLGGLPGQKGIPGLPGDAGIPGQDGRPGLPGPQGPKGDAGIPGGSGSPGA
PGAKGNMGEMGFPGPTGAKGTPGQSGRSGGPGSSGASGFPGAKGEPGSPGFGSPGVTGPK
GEPGQSGFPGQNGVKGTPGTPGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGIPGNP
GLSGPPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDPGLPGFGGPGSPGLPGLPG
AKGDLGAPGSSGSPGFPGQKGEMGFSGLPGSPGSVGPPGAPGVALQGPKGNAGPPGPPGR
GGPPGSEGPRGPVGSGGTKGEKGISGIPGSPGFPGAKGDFGSPGFPGNAGIPGAKGLKGD
IGLPGVPGFPGPKGDSGIPGQSGLPGDPGDGGPAGPPGDPGFAPAPIVLKGERGSPGPSG
LPGGRGATGPPGLEGLSGQPGQPGDSGPEGPPGFSGASGRKGDPGPAGQPGERGYPGPPG
SDGLQGPPGPSGSASVAHGFLITRHSQGEDVPLCPEGTSLIYDGYSLLYVQGNERAHGQD
LGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPTPMPMTMAPITGEGIKPYIS
RCAVCEAPAMVIAVHSQTIQIPTCPSYWEPLWIGYSFMMHTSAGAEGSGQALASPGSCLE
EFRSAPFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRVSRCVVCM
KRT
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacttgaagagtctgcgaaatctcgcggtggggttggtgctcgtaaccctg
tgtatcatggtccaggagtcggaatcagcggcctgtcatggctgtgcagcgggatcaaag
tgtgactgcagcggggtaaaaggaggcaagggcgagaggggtttcccagggctacagggt
cagccaggcgtaccagggttccccggacctgaggggccaatcggaggcaggggagagaag
ggtggtgacggaccttcagggccatccggtccaaaaggaattaggggacctcctggactg
cccgggttcccaggaacaccaggaattccaggtctcccaggacaggacgggcccccgggc
ccaaggggaactgcaggctgcaacgggaccaagggtgagagaggattccctggaagtcca
ggattccccggactggagggccgatcgggtccacctggtctgccgggacaaaagggagac
ctaggcgatgtcatctccaatgaccgcttcggacagaaaggaggtgtaggcctaccaggt
ttgcctggagtccccggtaacaccggccctgcgggattgtcgggccctgtcggtccacct
ggccccagaggttatgagggtcgttccgggcctcctggtcctcccggtcctaagggtaac
atgggattgaacttccaaggtcccaaaggagacaagggggatccaggcctgcaggggcct
cccggtccacctggacaggtcggggagcagaagagacccaccgagttagagatccagaga
ggagagaaaggtgatcaaggtttacctggtccagccggtgatcctggttatactggtccc
cctggtgtatctggaggttcgaagggagagaaaggagagcctggagaagcaggcaaacgc
ggcaaaccggggaaagatggcgacccaggtcctgctggattccctggtagtaaaggagac
ctaggcggcccaggtctgccaggtcgggatggtgacaggggggacaaaggtgaccgtgga
taccctggacctccgggcgtggtgattaatggtcagacaggagcacgtgtggggccaaaa
ggagagcctggtttccccgggtcatcaggaaggaaaggagacagaggacaacctggtctc
tcaggtcctccaggccaaccaggaaccccaggtaccggaggtgtaggccaacccggttcc
ccaggcttcccaggagagaggggccagaagggagacgagggccagccaggcatctccctc
cctgggcccccaggacgaaatgggacccctgggcttcagggaccaccaggccctcccggg
gccgcaggggtctccacagggggcgggaactgtttaggaggggcccccggcttaccagga
caacaaggagacagagggtttcaaggagagactggacagaaaggtgacaagggagaaacc
tgtgtgaactgtttctcacgtgggaactccatccctggagcaccaggccctcccgggcct
cccgggttcccaggtggaccaggaggaccaggggctaaaggtgacagaggatatccaggt
ggcccagggccctcaggttcttctggtttgcctggtccccagggtgcacctggtttccca
ggagagaagggtgacccaggtgaggctattgctgtggatggggtgaggggcgacaaggga
gacacagggttccccggaccccctggcctgcctggtctggacggaggacctggtcgcaat
ggagttcctggagctcctggacccaaaggaacatctggttctctgttagtgaagggtgag
cgagggcctccaggtgagcccggtctgcagggtctcccaggtgacaggggtggccccgga
tccccaggcttcggcccccagggaccccctggagagaagggtgttcagggcgtctcaggg
agaacgggaacacctggatcaccaggcactaaaggtgagccgggtcaaacgatagcagag
aagggactcccaggacccaggggacaggatggagaccccggtcttcctggaaacccaggc
aaccccggcgggccaggacagcccggtttccccggcttaccaggtgccaagggcgacccc
ggcctctccggcattggactgccaggaccccccggcgctaaaggattcccaggctcatct
ggtgtgccaggtggtcccgggggtccaggaagaccaggagtggacggcctccccggtgag
ccaggtggacctggagctaagggagagccaggattcgggcttccaggtccccagggccct
ccaggttttcctggacccaaaggattacctggacccaaaggagactccggtttccccggc
aaccccggctcgcccggacgttctggcttcgacggtggccctggtgccaaaggtgactct
ggtatccctggtatatccggagcccgtggccctccaggttcgccctccatcggctctcag
ggcatccccggccccattggacccccaggacccatgggctctccaggatactcaggcgcc
aacggtgagaagggagaccccggttctcccggcctggacattccagggttgccaggcgac
agaggaagtcccggtttccccggcaaccccgggggagttggaccacagggtaaccctggt
ggccctggccgagacggactgcctggcctgcctggtggtaaaggagacatgggtgtgatg
ggagctcccggacctttgggatcccctgggaaccccggagcccccggcttccctggacct
aaaggtgacgatggtttcccagggcgaccaggtgggcctggcggttcaggtctgaaggga
gacaggggagagcccggtattgcgggactcccaggacccagcattcctccccaggaactg
aagggtgggaagggagaaccaggagcaccaggtttaggtggactgccaggtcaaaagggt
atccctggtctccctggagacgctggtataccaggacaggacggacgacctgggttgcca
ggacctcaaggtcccaaaggagacgcaggtatccctggaggatcaggctcaccaggagcc
ccaggagctaaaggcaacatgggagagatgggcttcccaggacccacaggggcgaaagga
actccgggtcaatcaggtcggtcgggtggacccggtagttcaggagcatcagggttccca
ggagctaagggagagcccggttcccctggctttggttccccaggagttacaggtcccaag
ggtgagcccggtcagtcaggattccccggacaaaacggagtaaaaggaactcccggaaca
ccaggtcttccagggtttcctggcggccctggcgccaaaggtgaccccggcctcccagga
ttccaaggttctcccgggattcccgggcctaagggtctggatggtatccccggtaacccc
ggtctcagcggaccacccggccgaccgggagagaacggccgtgccggatcacctgggttc
ccaggggacaagggtcaggcgggtcgtgacggaatccctggaccagcgggagtcaaagga
gacccaggtcttcctggtttcggtggccccggttctcctggtctcccaggattaccaggt
gctaagggagatcttggcgcccctggttcttccggtagccctggcttccctggtcagaag
ggagagatgggtttctctggcctgcctgggtcccctggcagcgttgggccccctggcgca
ccaggtgtggccctccagggtcccaaaggtaacgccggcccccccggaccccctggaaga
ggaggtcctcctggctccgaaggtccccgtggccctgtcggcagcggagggaccaaaggt
gagaagggaatttccggaattcctggatcgcctggtttccccggagcgaagggagatttc
ggatcgcccggattcccgggtaatgctggcattcctggtgccaaagggttgaagggagac
atcggactgcctggagttcccggattcccaggaccaaagggagattctggaatccctgga
caatctggtctccctggagaccccggagatggtggccctgctggaccaccaggtgaccca
ggttttgctccagcccccatcgtgctgaagggagagcgtggctcccctggcccttcaggt
ctaccaggcggtcgtggcgccacaggaccccccgggctggagggactctcaggtcagccc
ggtcagccaggagactccggtcctgagggacccccaggattcagtggagcctccggccgc
aagggagacccaggacccgccggacagccaggtgagcgtggatatcccggtccccctggt
tcagatggcctgcagggccccccaggtccatctggatctgcctctgtggcgcacggcttc
ctgatcaccagacacagccagggcgaggacgtccccctctgcccagagggcaccagcctc
atttacgatggctactctctgctctacgtacagggcaacgagagggcacacggacaggac
ctgggaactgctggtagttgcctgcgtcggttcagcaccatgccattcatgttctgtaac
atcaacaacgtgtgtaactttgcctcccgtaacgactactcctattggctgtccacaccc
acgcctatgcccatgactatggcccccatcaccggagagggcatcaaaccttacatcagc
aggtgtgcagtgtgtgaggcccctgccatggtgatagctgtacacagtcagaccattcag
atccccacctgccccagctactgggaaccactgtggatcggatactccttcatgatgcac
actagtgctggtgctgagggttcgggtcaggctctggcttctcctggctcctgtctagag
gaattccggagcgctcccttcatcgagtgccacggtcggggaacctgcaactactacggc
aactcctacagcttctggctggctaccgtcgaccaatcagaaatgttcaggaagccacag
tcggagacgctgaaagcaggtaacctgcggacgcgcgtcagccgctgtgtggtctgtatg
aagaggacgtaa
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