Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378894
Help
Entry
139378894 CDS
T10872
Name
(RefSeq) rho guanine nucleotide exchange factor 11-like isoform X1
KO
K12331
Rho guanine nucleotide exchange factor 11
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
139378894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139378894
Membrane trafficking [BR:
ocla04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
139378894
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
RhoGEF
PH_16
PDZ
PDZ_6
RGS
PDZ_2
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
139378894
NCBI-ProteinID:
XP_070977583
LinkDB
All DBs
Position
21:31090869..31122111
Genome browser
AA seq
1453 aa
AA seq
DB search
MSLRPPTSTLDSPFAAWLSSLTIGDSERKTSSSQQREPLADFPTESTGQGLVQRCVVVQK
DQLGFGFTVCGERIKLVQNVRPGGAAVKAGVHEGDRIIKVNGSLVSSMSHQEVVKLIKSG
TYVALTLQGPPPSAAALPLHPLPTDLLPNQRTSLGGEAPPPPPPPLSPGLTSNPSQRITK
PLQNLDVQKHATQILRNMLEQGEAELQDLMGELLLNPSPSLEERIESAKRRAQQVRVKIQ
QDLDGTRLESVTSYVVAGEGRLSGDSSEGDFEACESPHSSPSTSSFRTPLYRRQGSDTHT
FSDSAGKAQIIGPEEEEEEDDSYPLNEMDGPFQDIELLKSRPAHMTVFMRYLFSQLLDPN
PLLFYLSVEVYLGSSPKDARALAPQICSHFLDPDAPLKIRVREEYLSDIESRLHAQEDIR
GPLSELQQQVLPDIQDQIQDYRSKQMMGLGSLFGEGDLQQLDGDPAKERLVVDRQVTALW
EILSKHEEESSSRLASAVLLYLRHSGIKLRDSRVFPGLSTEKEKWLSFFPKTKKLSSSKK
EKDGEDRKRNPILKYIGKPRSTSQSTFHVPLSPTEVRPGSVRNIIQQFENHTEIPGEEGA
EGDPPRLSSSSLGEDSMDSPTVSMRLARSESLKAQGEGRRRGGSSGAETVPRSRSDVDME
DCGEESEGPGLRPLNHSTSSASSSSARSCENPTPPYTPRSSRRKSVEFPVALLPDAPALE
EDVVDSHNWQETVAPQVLATLCPREVDRQAVIYELLTTEASHLRTLRVLDQVFFQKMRCV
LSSEELACIFPNLPQVYELHASLCEAMKKRRESPIVQGIGDIMLARFEGVAGEEFQEQAS
HLCSQQSQALELIKNKQRKDPRFAHIIQECEASPHCRRLQLKDLLVSETQRLTKYPLLLD
NILKHTEAGSTDLPPLQQAQACCRGILQAVNEVVRETEHRQRLNQYQRRLDPTPQFKSLD
LTSKRMIHEGPLTWKVSKDKTLEIQALLLSDLLVLLQRGPDDRLLLRCPSRFLGGGGGGS
GDTKASFSPVVQLDSLLVRSVATDNKALYVISTTEQQIYELVAGTSSEKNIWKDQLEKTI
SLAAGSSPSTNNRSTPIFSPSLGNASPVSTGSHVYQSDDSMTEQAVSMGTNSPNNEDNEL
TPTTPTAQSGAFLHSEGRDYVKKQIGVAEAALEDVEILKRLIFHNFEEVGWSHDSDGTPT
NETANERSPLNDGQRLASSETLLSASPSQLKAEHSEAPPSEVGSPSVHVVRKAVVAGSPS
IPDDITGVNLHSDQSPEPRGGASVRGNVFYLVMPTEQGDGLLDESHTDEVIDPPTLTSTE
LPDLDQEVMSSNIKHHEEEGQVSSILSAGNQLEPGNLRREGGLGQSQKVLQSYVIKHVDE
IFHTIEELMSKLHQLRDIETAHHQLLKTLREPPVNQESGDLPRNQETVVRTPSLDRDPGD
AEPAKPEILSTGF
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgagtctccgcccccccacctcaacactggacagcccttttgctgcttggctcagcagc
ctgacgataggagactcggagcgcaagacctccagcagccagcagagggagcctctggct
gacttccccactgagagcacaggtcaaggtctggttcagagatgtgtggttgtacagaag
gaccagctagggttcggcttcactgtgtgtggcgagaggatcaagctggtgcagaatgtt
cgaccaggtggcgcagcggtcaaggcaggggtccacgagggagacagaatcataaaggtc
aatggctcgctggtgtcgtccatgtctcatcaggaagtggtgaagctcatcaagtctggg
acatatgttgctctgactcttcaagggccgcccccttcagcagctgccctccccctacat
cccctccccactgacctcttacccaatcagcggacgtcactgggaggagaagccccgcct
ccaccacctccacccctctcccccggactgaccagcaacccctcccaaaggatcaccaaa
ccactgcagaacctagacgtacagaaacacgccactcagatcctcaggaacatgctggaa
cagggagaggctgagcttcaggacttgatgggggaactgttactgaacccctccccatcc
ctggaggagcgaattgaaagtgccaagcggcgggcccaacaagtcagggttaaaatccag
caagatctggatggaactcgattggaatctgtgaccagctatgtagtagcaggagaaggt
cggttgtccggggattcaagtgaaggagactttgaggcctgtgagagcccccactcctcc
ccctccacctcctccttcaggacccccctctaccggagacagggctctgacacacacacc
ttctccgactcggctgggaaggctcagatcattggcccagaggaagaggaggaagaggac
gacagctatccactcaatgagatggacggcccatttcaggacatagaacttctcaagtcg
cgaccggcccacatgaccgtgttcatgagatacctcttcagccagctactggatcccaac
ccgctgctgttctacctatcggtggaggtctatctgggctccagccctaaagacgcccgt
gccctcgccccacagatctgctcccacttcctggaccctgatgctccgttgaaaatcaga
gtacgagaagaatacctgtctgatatagagagtcgactccatgcccaggaggacatcagg
ggacctctttctgagctccaacagcaggtgctgcctgacattcaggaccaaatacaggat
tacaggagtaagcagatgatgggtctgggttctctgtttggagagggagacctgcagcag
ctggatggagacccagccaaggagaggctagtggtggacagacaggtcactgctctctgg
gaaatactctcgaaacacgaagaggagagcagttctcgtctagcctctgcggtgctgctg
tacctccgtcactcaggcataaagctgagggactccagggtgttcccaggcctcagcact
gagaaggagaagtggctctccttctttcccaagaccaagaagctgagcagttcaaagaaa
gagaaggatggagaggacaggaagagaaaccccatcctgaagtatatcggcaagcccagg
agcacctctcagtccaccttccatgtccccttgtctcccactgaagtgcgcccgggcagt
gtgaggaacatcatccagcagtttgagaaccacacagagatccccggggaagagggggct
gagggagaccctccgagactgtcctccagcagcctgggagaggacagcatggacagcccc
acggtgtcgatgcgtctggctcgtagtgagtctctgaaggcgcagggggaggggcgtcgg
cggggcgggtcctcgggggcggagacagtccctcggtcccgtagcgacgtggacatggag
gactgtggagaggagagtgaagggccgggcctgagacccttaaaccacagcacctcctct
gcctccagtagctcagcacgatcctgcgagaaccccacccctccgtacacccctcggtct
tccagaagaaagagtgtggagttcccagtggccttgctccctgacgccccagccctagag
gaggacgtggtggacagtcacaactggcaggagacggtggccccgcaggtcctggctact
ctctgtccccgagaggtggacagacaggctgtcatctacgagttgctgacgacggaggcg
tctcacctgcgtacactcagggtgttggatcaggtgttcttccagaagatgaggtgtgtt
ctgagctctgaagagctggcctgcatcttccccaacctgcctcaggtctacgagctccac
gcgagtctgtgcgaagccatgaagaagagacgagaatctcccatcgttcagggcatcggc
gacatcatgctggccaggtttgagggcgtggcgggggaggagtttcaggagcaggcgtcc
cacctgtgcagtcagcagtctcaggccctggagctcatcaagaacaaacagcgcaaagat
ccccgcttcgcacacatcatccaggagtgtgaggccagtcctcactgtaggaggctgcag
ctgaaggacctgctggtgtctgagacgcagagactcaccaagtaccctctgctactggac
aacatcctcaaacacacagaggccggttccacagacctccctcctctccaacaggctcaa
gcctgttgccgggggatattgcaggccgtcaacgaggttgtcagggagacggaacaccgg
cagcggctcaaccaataccagcgcaggttggaccccacgccacagttcaagagtctggac
ctgaccagtaagagaatgatccatgagggtcctctcacctggaaagtcagtaaagacaaa
accttggagatccaggcgctgctgttgtcagaccttctggtgttgctccagagaggtcca
gacgaccggctgctgctgcgctgcccgtcccgctttctggggggggggggtgggggtagc
ggggataccaaggcctccttcagccccgtggtccagctagactcactgctggtgcgctct
gtggccacagataacaaggccctgtacgtcattagcacaacagagcaacagatatacgag
ctggtagcagggacgtcctcagagaaaaacatctggaaggaccaacttgaaaagaccatc
tcattggctgctggctcctcaccttcgaccaataacagatccacacctattttctccccg
agtcttggtaatgcttcccctgtctcaactggcagccatgtctaccaatcagacgactcg
atgacggagcaggcagtttcaatggggacaaactctcctaacaatgaggacaatgagctc
acgcccaccacaccaacagcgcaatcaggggctttcctccacagtgagggacgggactac
gtcaagaagcagattggagtggctgaggcagctcttgaagacgtggagatactaaagcgg
ctgattttccacaactttgaggaagttgggtggagtcacgactcggacggaacgcccaca
aacgagacagccaatgagaggagcccgctcaatgacggacagagactggcatcctctgag
actcttctcagtgccagtcccagccaattgaaggctgagcattccgaagccccgccctcg
gaggtggggtcccccagtgtacatgttgtgaggaaagctgtggttgcgggctctccttct
atccctgatgacatcactggtgtcaacctccactccgaccaatcacctgagccgagaggc
ggggccagtgtacggggaaacgtgttctacctggtgatgcctacagagcagggagacgga
ctgctggatgagagtcacacagatgaggtcattgatccccccaccctgacctccaccgaa
cttcctgatctggaccaggaagtgatgtcatcaaacattaagcatcatgaggaagaaggg
caggtctcttccatcctgtctgctggcaaccaattggagccaggaaatctgaggcgggag
ggagggcttggccaatcacaaaaggtcctccagagctatgtgatcaaacacgtggatgag
attttccacacaatcgaggagctgatgagcaagctgcaccagctgagggacatcgagaca
gctcatcaccagctgctgaaaacactaagagagccgcctgtcaatcaggagtcaggtgat
ctccctcgcaaccaggaaaccgtcgtcaggacgccgtctctggaccgggacccaggggat
gcagaaccagctaagcctgagatcctctccactggattctaa
DBGET
integrated database retrieval system
