Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378923
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Entry
139378923 CDS
T10872
Name
(RefSeq) low-density lipoprotein receptor-related protein 10-like
KO
K20050
low-density lipoprotein receptor-related protein 3/10/12
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139378923
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
139378923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
CUB
PBSX_XtrA
Motif
Other DBs
NCBI-GeneID:
139378923
NCBI-ProteinID:
XP_070977637
LinkDB
All DBs
Position
21:32631707..32648658
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AA seq
1059 aa
AA seq
DB search
MTVSFNLCVINILLVTAYSSLELVSSTAHCGRSPQVLEAARGEIRSFVHRSSSYRPRPFY
CSWIIKAHVGEPVILSFSQFSTRCKKEWVSVTSSTGKPITLCGSDLPKPMELMGGNITVT
HHFLPHLFPVSAFRLGYVRDSGDCTGVDFECLGGPCLPLSWRCNGRVECLGEGVGLGIDE
QDCDGEMKILNLDPEHGKTVVATATPESYRARETVREKNRGSNSRGRDWETVGKAPGELE
KEEEETEKQVDENGDHTKEKEPTNPIYDFWQFQAHRAHPSVTRAPVEWPCGGLLQAFYGT
FTPPSIRGPSLFCVWTLDPQESRPLKLDLRLLELGPGDTVTITDRQQGTGELLRTITSAS
NYKAIQVESRTGLLSLTYRTLPGSEGLGFNATYRVGGYCPPWEGKCGGAAGGCYTQEQKC
DGHWDCPETGHDEAGCRGCPRDQFACGVAGQRALLAGHSFLGRPVCFPAKERCNYQLYCS
DGSDERDCSICQPGTFHCDSDRCVFESWRCDGQLDCKDGTDELNCTVTLPPKVVTCGGLL
QTFYGTFAPPSIRGPPLFCVWTLDPQDSRPLKLDLRLLELGPGDTVTITDRQQGTGELLK
TITNASNYKTIQVESRTGLLSLTYRTLPGSEGLGFNATYRVGGYCPPWEGKCGGAAGGCY
TQEQKCDGHWDCPETGHDEAGCRGCPRDQFACGVAGQRALLAGHSFLGRPVCFPAKERCN
YQLYCSDGSDERDCSICQPGTFHCDSDRCVFESWRCDGQVDCKDGTDELNCSVTLPRKVI
TAATVGSLVCGLLLVIAMGCTCKLYSLRTREYSMFAPISRQEAALIQQQAPPSYGQLIAQ
GIIPPVEDFPTENPNESSSLTLRGILQLLRQDTANSPRRRRRPRFVRRAVRRMRRWGLIP
RTASRPSQPSSSAPQQTDPTSTGAEPSQSTPATSSLAVEAVNLPLPQKLGLLPQTVEHPP
PPPPASLPPPLVSIPATPQSFPVAAPPTPSSPSLASLFHSLGRGISRFRASPFSSSSPTN
SLPLSTSPSFSSSEDEVLLIPLSEDMTSEDDVPLLTLDP
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgactgtctctttcaacctttgtgtcatcaacattttgttggtaactgcctacagcagc
ctggagctggtctccagtactgctcattgtggacgatctccccaagtcctggaggctgcg
agaggagagatcagaagctttgtgcaccgcagctcgtcctaccgccctcggcccttctac
tgtagttggattatcaaggcacatgtaggagagcctgttattctcagtttctcccagttt
tctacacggtgtaagaaggaatgggtctcggtgacgtcatcgactggcaagcccattacc
ctctgtggttccgacctgccgaaacccatggagttgatggggggaaacattacagtgacg
caccacttcctgccacacttattccctgtgtctgcgttccgcctgggctatgtcagagac
tccggggactgtacgggtgtggactttgagtgtttgggcgggccctgcctgcccctgtcg
tggcgttgtaacggccgggtggagtgcctgggtgaaggggtgggcctgggcatagacgag
caagactgtgatggagagatgaagatcctgaatctggatcctgagcatggcaaaacagtg
gtggccaccgccacaccagagtcctacagggcgcgggagaccgtaagagagaagaacagg
gggagtaacagcagagggagggattgggaaacagtagggaaggcaccgggcgagctggag
aaagaggaggaggagacagagaagcaagtagacgagaatggggaccacaccaaggaaaag
gagccaaccaatcctatatatgacttctggcagttccaggctcacagagcccaccccagt
gtgacccgggcccccgttgagtggccctgcgggggcctcctccaggccttctatgggacg
ttcacccctccttccatcaggggcccctctctgttctgtgtgtggaccctggacccacag
gagtctaggcctctgaagctggacctgcggctgctggagctggggcctggagacacggtc
accatcactgacagacagcagggcaccggggaactcctcagaactatcaccagcgcgtcc
aattacaaggccatccaggtcgagtcccggaccggcctcctctccctgacctatcgtacg
ctccccggctctgaggggctaggcttcaacgccacctaccgtgtcgggggctactgcccc
ccctgggaaggtaaatgtgggggtgccgcggggggctgctacacccaggaacagaagtgt
gacgggcactgggactgtcccgagacgggacatgacgaagcagggtgcaggggatgtccc
cgggaccagtttgcctgtggagtggctgggcagagggcactgctggcggggcatagcttc
ctagggcgtccggtgtgtttccctgccaaggagaggtgtaactaccagctgtactgttct
gatgggagcgatgagagagactgttctatatgtcaacctgggaccttccactgtgacagt
gacaggtgtgtttttgagagctggcgctgtgacggccagctggactgcaaggacgggaca
gacgagctgaactgcaccgtgaccctacctcccaaggtcgtcacctgcgggggcctcctc
cagaccttctatgggacgttcgcccctccttccatcaggggcccccctctgttctgtgtg
tggaccctggacccccaggactctaggcctctgaagctggacctgcggctgctggagctg
gggcctggagacacggtcaccatcactgacagacagcagggcaccggggaactcctcaaa
actatcactaatgcgtccaattacaagaccatccaggtcgagtccaggaccggcctcctc
tccctgacctatcgtacgctccccggctctgaggggctaggcttcaacgccacctaccgt
gtcgggggctactgccccccctgggaaggtaaatgtgggggtgccgcggggggctgctac
acccaggaacagaagtgtgacgggcactgggactgtcccgagacgggacatgacgaagca
gggtgcaggggatgtccccgggaccagtttgcctgtggagtggctgggcagagggcactg
ctggcggggcatagcttcctagggcgtccggtgtgtttccctgccaaggagaggtgtaac
taccagctgtactgttctgatgggagcgatgagagagactgttctatatgtcaacctggg
accttccactgcgacagtgacaggtgtgtgtttgagagctggcgctgtgacggccaggtg
gactgcaaggacgggacagacgagctgaactgttccgtgaccctgcctcggaaggtcatc
accgcggcaaccgttggcagcttggtctgtgggctgttgctggtcattgctatgggctgc
acctgcaagctttactcactgcgcacccgagaatacagtatgtttgctccaatcagccgc
caagaggcggcgctgatccagcagcaggctcctccctcctacggtcagctgattgcccag
ggcatcatccctccagtggaggacttccccacagagaaccccaacgagtcttcctctctt
actctgagaggtatcctccagctcctcagacaggacactgccaactctccacgtcgccgt
cgccggccccgattcgtccgccgggctgtccgtcgcatgcggaggtggggcttaatccct
agaaccgcctccaggccctcccagccgtccagttccgccccccagcagacagatcccacc
tctactggtgcagagcccagtcaatcaactcccgcaacttcctcattggctgtggaagcc
gtcaatctgccgttgccacagaaactaggcttgctccctcagacggtagagcacccacca
ccgccgcctcccgcctcccttcctccacccctcgtctctatcccagccaccccccagagc
ttccctgtggctgcccctcctacccccagtagcccctccctggcctcgctcttccactct
ctggggcgcggtatctctcgcttccgcgcctcgccgttctcctcctcctcccccaccaac
tccctgcccctctccacatccccctctttctcctcttcggaggatgaggtgctgcttatt
cccctctcggaggacatgacctcggaggatgacgtccccctgctaacccttgatccctga
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