Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378971
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Entry
139378971 CDS
T10872
Name
(RefSeq) netrin-1-like isoform X1
KO
K06843
netrin 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139378971
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Axon guidance molecules
139378971
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Laminin_N
NTR
EGF_laminin
EGF_LMN_ATRN
Motif
Other DBs
NCBI-GeneID:
139378971
NCBI-ProteinID:
XP_070977725
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Position
21:35451307..35469727
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AA seq
870 aa
AA seq
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MGRLDDMMFLPVSPPPSFSLSFLLLVLTFLPLSLLSRSLSHSPLSWTSPHDPCYHLDGRP
RHCLSEFINAAYGVPVSAANSLRGPPDQNAVNVSSVTDLHNPYNLTCWTAQVGGTDGGDW
VLTLPLGRRFEVTYISLQFCQQGEPSDPVSVSLLKSMDHGRTWRPMQHYSSDCPGSFGLQ
AQTVAQTRHQETEPLCSDPRPLQRHRGGMVLAFSTLDGRPSSPDFDYSPTLQDWVTATDI
RVVFHQVTQSQQTKLGSSEDRGVGVGLGADAGVLRWRVGSKNKAVVGQVNGDNNAWGFVE
KERKKTEKRGRSRGEKMDKSWRRGHNKGSGGQGEDGHNVTRKDLERDTQAMDTSKRGNGK
GKGRGLKREGGHHWSPCQEGGVCDWTIEGQGKDNKGRELRRRRNNNRNLQLVPPSPLISA
PPVRPPLALSDLQVGGRCKCNGHASRCRHDDADRVVCVCEHHTAGADCDVCEDFYYDRPW
QRATPSQPHPCVSCECNGHSSKCRFSMEVFQQSGRRSGGVCLKCRHHTAGRHCQYCQNGH
TRDHGKLPNHHKACQSCQCHPMGAVGRWCNQTSGQCLCRDGVTGLKCNRCALGYKQGRSP
LRPCIRVQEEASPTTPVYQPQYSVDEECVSYCQPSLVKLRMNLETYCLKDFVLKLQVRGM
ERSGPWWQFSVWIQTVFRSGSSSRVRKGPQALWVPDRDLGCGCPALQVGRTFLLIGAEGG
RRNWGPEERRLVADRSTLALQWREHWNPKLRGFRGQDKRGRCPPKLPGGGDPHGGHSKHH
HSEYTPPHLVTEKETEVKVHPHKHSHSHTPSDSVKDMEEEAENSVALDTNTHTQSSSHHR
PGPSQSQEEQQEQTPSTSTPSLVCSTQTPV
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggctcgatgacatgatgttcctgcccgtctcccctcccccctccttctccctc
tcttttctcctactagtcctcacttttctccctctttccctcctttcccgttcactctct
cactcccctctgagctggacttctccccatgacccctgctaccacctggatgggcgtccg
cgacactgcctgtcggaattcatcaatgccgcctacggtgtcccagtcagtgccgccaac
tccctccgaggacctcctgaccaaaatgctgttaacgtcagctccgtcacggacctccac
aacccctacaacctgacctgctggacagcccaggtgggaggcaccgacggcggggactgg
gttctcaccctccccctgggccggcgctttgaggtcacttacatcagcctgcagttctgc
cagcagggggagccgtcggatccggtctccgtctctttgctcaagtccatggatcacggg
cgcacctggaggcccatgcagcattactccagcgactgccccgggagttttgggctccag
gcccagacggtggcccagaccaggcaccaggagacagagcctctgtgctcggacccccgg
cccctgcagaggcaccggggaggcatggttctggccttctccaccctggatggaaggccc
tcctctccagactttgactacagccccaccctgcaggactgggtgacggccacggacata
cgggtggtcttccaccaggtgacccagtcccagcagactaagttgggaagttcggaggat
aggggggtgggtgtgggattgggagcagatgctggggttctgaggtggagggtggggtcg
aagaataaagctgtggttggtcaggtgaatggggacaacaatgcttgggggtttgtggag
aaggagaggaaaaagacagaaaaacgagggagaagcagaggagagaaaatggacaaatcc
tggcggaggggtcacaacaaagggtcgggaggtcagggagaggatggacacaatgtgacc
cggaaggatttagaacgagacactcaggcaatggacacctccaagagagggaacggtaaa
ggaaaagggcgtggcctcaaaagggaggggggtcaccattggagtccgtgccaggaaggt
ggcgtctgtgattggacaattgaggggcaggggaaggacaacaaggggcgggaattgagg
aggaggagaaacaacaatcggaatctccagctagttcctccctccccattgatctccgcc
ccccctgtccggccccccctggccctctcggacctgcaggtggggggcaggtgtaagtgt
aacgggcatgcctcacggtgtcgtcatgacgacgcggaccgggtggtgtgtgtgtgtgag
caccacacagcgggggcagactgcgacgtatgtgaggacttctactacgacaggccctgg
caacgagccacgcccagtcagccacacccgtgcgtctcgtgtgagtgtaacggccactcc
tctaagtgtcggttcagcatggaggtgttccagcagtcgggccggcgcagcgggggggta
tgtctgaagtgtcggcatcacacagcgggacgccactgccagtactgccagaatggacac
acccgtgaccacggcaagctacccaaccaccacaaggcttgccaatcgtgccagtgtcat
cctatgggtgctgtgggtcgctggtgtaaccagacatcaggacagtgtttgtgtcgggat
ggggtaacgggtttgaagtgcaaccgctgcgcccttggctacaaacaggggcgctcgccc
ctccggccctgcatccgagtccaggaggaagcaagccccaccacacctgtgtaccaaccc
cagtacagtgtagatgaggagtgtgtatcgtattgccagccatcgctggttaaattgagg
atgaacctggagacgtactgtctaaaggactttgtcctgaagctacaggtcagagggatg
gagcgttcaggcccctggtggcagttctcggtctggatccagaccgtgttccgttcgggt
tcttcctcccgcgttcgcaagggcccccaggcactgtgggttcccgaccgcgacctgggc
tgcggctgccccgccctccaggtgggccgcaccttcctgctgattggggccgaagggggg
aggcggaactggggccccgaggagcgacggctggtcgccgatagatccacactggctctc
cagtggagggagcactggaatcccaaactgagagggttcagggggcaggacaagaggggc
cgctgccccccaaaattgcccgggggtggggacccccatgggggccactcgaagcaccat
cactcagagtacaccccacctcaccttgtgacagagaaagagacagaggtcaaggtgcac
ccacacaaacattcacattcacacacaccctcagactctgtgaaagacatggaagaggag
gcagagaactctgtggcgttggacacaaacactcatacacagtcctcatcacaccacaga
cctggaccttcacaatcccaggaagagcaacaggaacagactccatccacctccacaccc
agtctcgtatgttcaacccagacccctgtctga
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