Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379036
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Entry
139379036 CDS
T10872
Name
(RefSeq) DENN domain-containing protein 4C-like
KO
K20163
DENN domain-containing protein 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139379036
Membrane trafficking [BR:
ocla04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
139379036
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Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
CA109-like
Motif
Other DBs
NCBI-GeneID:
139379036
NCBI-ProteinID:
XP_070977864
LinkDB
All DBs
Position
21:complement(39903145..39963048)
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AA seq
1945 aa
AA seq
DB search
MIEDKGHRVTDYFVVAGLTDKSTPLEQDLSETKSSGPKAPITDLAVINKSAGETVPEGFT
CIESTYSAQQANLNHGSLKSPEIFLCYKRGHDKPPLIDIGVLYEGKERLIQGCEVIQATP
YGRCANVNNSSATSQRIFITLRRAPPVQPQNSLSVTDICVIVTSKGETPPHTFCKVDKNL
NCGMWGSSVFLCYKKSVSVSNSINYKAGLIFRYPEDDYESFPLSESVPLFCLPMGAKIEC
WTPNTRYPLPVFSTFVLTNSSGEKVYGAAIQFYEAYPIDLLSEKQKVQLGLLTTVEKKMI
PNRTVNTNKCICLLSRWPFFESFRKFLMFLYKLSVSGPHPLPIEKHISHFMHNVSFPSPQ
RPRILVQLSAHDTLMLAQPVCTPMPLSGADYSTLLINLGSENCATLLHFVLLESKILLHS
LRPAVLTGVAEAVVAMIFPFQWQCPYIPLCPLSLAGVLNAPCPFIVGVDSRYFDLYDPPP
DVVCVDLDTNTIYLSDEKKHSNWKNLPKKPCKSLFNSLTNLQHQLGIVRRTAQEGLAVEM
TPIEADFTWHKKMTSLEMEIQEALLRFMAHILKGYRSYLKPITQAPSEKATSADSLYDLQ
GFLKSRERAHQKFYSQLTKTQIFIRFIEECTFVSDKDTGLAFFDDCIEKLFPSDKGNDKG
TKVEGESSEDTKLMELDESQRSEHTVFVMPPEPPTTEDESDPPTRYSYKSFPRLRMDLFD
RPKEVIPALRSSTPGASLSSSPALLAKRTKQEIKLAYKMAKRFYSDPPLWAKCLFSHCYS
LWFICLPVGVRLVQSKSWAMQQAYNVLLKMRMSEVEVLDEVCYRVVMQLCGLYGQPVMAV
RVLVEMKKAGVHPNAITYGYYNKAVLEGPWPSRNRSGLFMWAKVRNVVRTVAQFKQALHR
IPATKGPTIITTVVSVSGDLLSHGSADHSSEVNGEDHTLFARSLIVGDATDNHCSTGGQS
DQGYGSKDELHQVQVDLAPSAAPLVDVDHRSKPKAQHNGGDIAGSVDSSVVVAEPTSPVE
AIPHVPSIVKLSTGGSFDTAMKRGETAPGKLFSLRCQSENVSLPEEGESTAPGGSGEAGP
AVQGQGQRQKAFSERSCSFSVESRAGMLMEKNGVDHIARRMGADARILADALSGCGTTQP
PTNPPSKALFKELESEEGRCPMLGKLSEEEGPVMDPTPLEEGLGKEEERMDGEDEMGLKL
EEEGDSGGRGDSSLPTLEMKEVDVGADPLSLLVSEHEELASVTSQELPHSMPAVVSRNLA
DEIEMYMSLRSPLGPKSSSMEFHQGGQGGDSSPDTAPVKQALERRSSLPVPPVKHPGGSS
GDSTPKRSPAAVTRSKTFAVMATRSRGVVASPRSSLTALVRSSQNGSLGSVINSISGMKM
DTLLSGPKMDVLKSGMKQAGNLASKVWGAVASAYSYSDDEDELAPGYRDRDSFPAGLDES
MLSGGGGGDSPTHRGPTQGLVSNGLTQSSTSLASSSSSSDTGRGPHSTLTPGRPGRGPDS
DQGSHHTSSSSIYQNCALEVLMSSCSLCRSCECLVYDEEIMAGWTADDSNLNTTCPFCRA
AFLPLLHVEFHDLRTNTAFYLKPSASGDSIHSASHHPTTTDSTVLVVGGAADTPRPDLIS
FPESSSEDPGEAPASQTATHKSLVPVPEPAQSDPLGLLEHQAGKRGTSLTRSNSVGGPLQ
SLVSYQRPPGHGVSTTSLPCSLTEVDGLGQKRPNPMPVSVPYLSPLVLRKELETLLENEG
DQVIYTHKFLSQHPIIFWNLVFYFCRLDLPSYLPGLILTSEHCNNGVQLPQTSLSQDSKQ
VYVQLLWDNINLHQEPGDPLYQSWRTLLEQKATLAPTDHQETRTFLNSIVRSIQTNDVYG
PINLLLREVKRHPEVKRQRGIYREILFLALVALGRENIDVEAFDREYRQAFDDLSTEQLK
TLHKIDRPPNSNVQWCLKCFGAPVI
NT seq
5838 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaggacaagggtcaccgtgtgaccgactactttgtggtggccgggctgaccgac
aagtccacgccactggagcaggacctgtcggagaccaagtccagcgggcccaaggcgccc
atcactgacctggctgttatcaacaagtcagcgggcgagacggtgccggagggcttcacc
tgcatcgagagcacctacagcgcacagcaggccaacctcaaccatggcagccttaagagc
cccgagatatttctctgctacaagaggggccacgacaagcccccgctcattgacatcggg
gtgttatatgaaggtaaggagcgtctcatccagggctgtgaggtaatccaggccactccg
tatggccgctgtgccaacgtcaacaacagctctgccacctcgcagcgcatcttcatcacc
ttacgccgtgcgccacccgtccagccccagaactccctgtccgtcaccgacatctgcgtc
atcgtcaccagcaagggcgagacgccgccacacaccttctgcaaggtggacaagaacctc
aactgtggcatgtggggctctagtgttttcctgtgctacaagaaatccgtgtcggtgtcc
aactccattaattacaaagccggcctcatcttccgctacccagaggatgactatgagtcc
ttccccctgtcggagtctgtgcccctgttctgcctccccatgggggctaagatcgaatgc
tggacccccaacacacgctaccctctccctgtcttctccacctttgtgttaaccaactcc
tctggggaaaaggtgtacggtgctgccatccagttctatgaggcctaccccatagatctc
ctcagtgagaagcagaaggtgcagttgggcctgctcaccaccgtggagaagaagatgatc
cccaaccgaacagtcaacaccaacaagtgcatctgcctcctttcccgctggcccttcttc
gagtcgttccgcaaattcctcatgttcctctacaagctgtccgtctcgggcccccacccg
ctgcccatcgaaaagcacatctcccatttcatgcacaacgtgtccttcccctcacctcag
aggcccagaatcttggtccagctctctgcacacgacaccttgatgctcgcacagcctgtg
tgtactcctatgcctctcagtggtgcagactacagtacactgctgattaacctgggctca
gagaactgtgccacgctgttgcactttgtcctgctggagagtaagatcctgctgcactcc
ttgagacccgctgtactcaccggggtggcagaggctgtggtggcgatgatcttcccgttc
cagtggcagtgcccgtacatccccctctgcccgctctctctggcgggggtcctcaacgca
ccctgtcccttcattgtgggcgtggactcccgctactttgacctctatgaccctcctccg
gacgtggtctgtgtggacctggacaccaacacgatctacctgtctgatgagaagaaacac
agcaactggaagaacctcccaaagaagccctgcaagagtctgtttaactccctgaccaac
ctgcaacaccagctgggcatcgtgcgtcggacggcccaggagggcttggcggtggagatg
acccccatcgaggcggacttcacctggcacaagaagatgacgtccctggagatggagatc
caagaggccctgctgcgcttcatggcccacatcctgaagggctaccgttcctatctcaaa
cccatcacccaggccccctccgagaaggccacctctgcagactcactatatgacctacag
ggtttcctaaagagcagggagcgagcccaccagaagttctattcgcagctgaccaagact
cagatctttatacgcttcatcgaggagtgcacattcgtcagcgacaaggatacaggcctt
gccttcttcgacgactgcattgagaagctatttccctctgataaaggcaacgacaaaggc
actaaggtggagggtgagtcctcggaggacactaagctcatggaactagacgaatcacag
aggagtgagcatacagtcttcgtcatgcccccagaacctcccaccaccgaggacgaatct
gatccccctacccgctacagttataagagtttccctcggttgcgtatggacctgtttgac
cgtcccaaagaggtgataccagcactgaggagcagtacaccaggggccagcctgtccagc
agccctgcactgctggccaagaggaccaagcaggagatcaagctggcctacaagatggcc
aagcgcttctactctgaccctccgctgtgggccaagtgtctgttcagccactgctacagt
ctgtggttcatctgtctgcccgtgggggtgaggctggtccagtcaaagagctgggccatg
cagcaggcctacaacgtcctgctcaagatgaggatgtctgaggtggaggtcctggatgag
gtgtgttaccgtgtagtgatgcagctgtgtggtttgtacggtcagccggtcatggccgtc
cgtgttctggtggagatgaagaaggcaggggtgcaccctaacgcgatcacctatggctac
tacaacaaggctgttctggaaggcccctggccaagtcggaaccgcagcggtctcttcatg
tgggccaaggttcgcaacgtggtgcgcactgtggcccaatttaaacaggcactccaccgg
atccccgccacgaaaggacccaccatcatcacgacagtggtgtcggtaagcggcgacctg
ctgagccacgggagtgcagaccactccagtgaggtgaacggagaggatcacacgctgttc
gcacgcagcctcatcgtaggagacgccacggacaaccactgcagcacaggaggtcagtct
gaccagggctacggctctaaagatgagctgcatcaggtgcaagtggatttggctccatca
gcagcccctcttgtcgatgtggatcaccgcagcaagcccaaagcacagcacaatggtggg
gacatagctggctcggtggacagttctgtggtcgtagcggagcccaccagccctgttgaa
gccatcccacatgtccccagcatcgtcaagctgtccacaggagggagcttcgatactgcc
atgaagagaggagaaactgccccagggaaactgttctctctgcgctgccagagcgagaat
gtctctctgccggaggagggtgagtctacagccccgggtggctctggggaggcggggcct
gcagttcaggggcagggccagcgccagaaggccttctcggagcgcagctgcagcttcagc
gtcgagagtcgtgccggcatgctgatggagaaaaatggtgtggaccacatcgcgagacgc
atgggtgccgatgcccgaatcctcgccgatgccctttctgggtgtggcaccacccaacca
cctacaaatccaccatccaaggccctttttaaggagttggagtcagaggaggggcgttgt
ccgatgctggggaaactgtcagaggaggagggtcctgtaatggacccaaccccattggag
gaggggctagggaaagaggaggagagaatggacggggaggatgagatgggactgaagttg
gaagaggaaggagattcaggggggaggggtgatagctctctgccaaccctggagatgaag
gaggtggatgtgggggctgatcccctctccctgctggtctcagagcacgaagagttggcc
tccgtaaccagccaggagctgccgcactccatgcccgccgtggtgtcccgaaacctggca
gacgagattgagatgtacatgagcctgcgaagcccactgggccccaagtcctccagtatg
gagttccaccaggggggccagggaggggactcttccccggacactgccccagttaagcaa
gctctagaacggaggtccagcctccctgtgccccctgtcaaacacccagggggttcaagc
ggggactcgacgcccaaacgcagccctgctgctgtcacgcgctccaagaccttcgccgtt
atggccaccaggagccgcggtgttgtggccagcccgaggtcgtcactgactgcgctggtg
aggtcatcgcaaaatggctcgctgggctcggtcatcaactccatctcaggcatgaagatg
gacaccctgctctctggtcccaagatggacgtgttgaagtcaggcatgaagcaggcaggg
aacctggccagcaaagtgtggggggctgtggcctcagcctattcctactccgatgacgag
gatgagctggccccgggctatagggatagggatagtttccctgccgggctggatgagtcc
atgctgtcagggggtggaggaggggacagtcccacccacagagggccaacccaaggcctg
gtgtccaacggactgacacagagcagcaccagcctggccagcagcagtagcagcagtgac
acagggagaggacctcactccacactgactccaggacggccagggagaggtccagactct
gatcaaggctcccaccacaccagctcctcaagtatctaccagaactgtgccctagaggtg
ctgatgtccagctgctccctgtgtcggtcctgtgagtgtctggtgtacgacgaggagatc
atggcgggctggacggcagacgactccaacctcaacaccacctgtcctttctgccgcgcc
gcctttctgcctctgctccacgtcgagttccacgacctacgcaccaacacagcgttctac
ctgaagcccagtgcatcaggagacagtatccacagcgccagccaccatcccacaactaca
gactccaccgtgctcgtggtggggggtgcagcagacaccccgcgcccggacctcatcagc
ttcccagaatcctcctctgaggacccaggggaggccccggccagccaaacagccactcac
aagagtttggtaccggtaccggagccggctcagtcggaccctctgggcttgctggaacac
caggcagggaagcgggggacttctctgacgcgcagtaacagcgtgggcgggccactacag
agcctggtctcttaccagagaccacccggacacggcgtgtccaccaccagcctgccctgc
agcctgacagaggtggatggcctgggacaaaagcggcccaaccccatgccagtgtctgtg
ccctacctcagccccctggtcctccgcaaagaactggagaccctactagagaacgagggg
gaccaggtgatctacacccataaattcctgagtcaacaccccatcatcttctggaacctg
gtgttttatttctgtcgcctggacctgcccagctacctgcctggcctcatcctcacctca
gaacactgcaacaatggagtacagctcccccagacctccctgtcccaggacagtaaacag
gtgtatgtgcagctgctgtgggacaacatcaacctgcaccaggagcctggcgatcccctc
taccagagctggaggaccctgctggagcagaaggccaccctggcccccacggaccatcag
gagacacggaccttcctcaacagcatcgtccgcagcatccagacgaacgacgtatacggc
cccatcaatctgctcctccgagaggtcaagcggcacccggaggtcaaacgccaaaggggt
atctatagggagatcctcttcctggcgcttgtggcattgggacgggagaacattgacgtc
gaggcctttgaccgtgaataccgccaggcctttgatgatctgagcacagagcagctcaag
actctgcacaagattgaccggccacccaacagcaatgtccagtggtgcctcaagtgcttt
ggagctccagtcatctga
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