Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379042
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Entry
139379042 CDS
T10872
Name
(RefSeq) tripartite motif-containing protein 16-like isoform X1
KO
K28076
finTRIM family protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139379042
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139379042
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
SPRY
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_6
zf-RING_2
zf-RING_5
DUF3584
Fib_alpha
Y1_Tnp
Motif
Other DBs
NCBI-GeneID:
139379042
NCBI-ProteinID:
XP_070977877
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Position
21:39973564..39976872
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AA seq
575 aa
AA seq
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MAEQGVLLDQGQFCCSICLDLLKEPVTINCGHSYCSNCIEDSWDKDDPTGVYSCPQCRHT
FSPRPALMKNSLLAMVVGNMKKTGLQATSPTLCFAGPGDVECDFCNGRKQKALKSCLVCL
ASYCETHLQPHYNVAPLMKHKLVKATTQLQDNICSHHDKLMEIFCRTDQQCICYLCTMDE
HKGHDTVSITAEKTEKQKQIGTSQQKVNQRVQEREKELKELQQAVEFLSRSAQAAVEESE
RIFTELIDSIERRRSEMKELIVAQENSAVSQAEALMERLEQEITELKRREIELEKLTHTE
DHIHFLEVASLSDHLSVIAKGTRYSGSYQSLASPSVFSDLPTIDVRPLQYFEDVSEAVSN
LREKLEGILKREWCRISTRVNLVDVLHPPEPKTRADFLQYSCRLTLDANTLYRQLFLSER
NRKVKLKRKGYSYHSSPDRFTQLCQVLCREGLSGRCYWEVEWSGWKIYAGVSYKDISRSG
PADDCQFGHNDKSWSLECCSNGYFFRHNNVKTEVARPQSSRVGVYLDHQAGTLSFYSVSD
TMTLLHSVQTRFTQPLYPGFWLHCFKTTAELCELD
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcagggagttctcctggaccagggccagttctgctgctctatctgcctggat
ttactgaaagagccggtcactatcaactgtggacacagttactgtagcaactgtattgag
gactcctgggataaggatgacccaacgggtgtttacagctgtccccagtgtagacatacc
ttctccccaaggcctgctctgatgaagaatagcctgctagccatggtggtcgggaacatg
aagaagacagggctccaggctacttctcctactctgtgctttgctggacctggagatgtg
gaatgtgatttctgcaatgggagaaagcagaaagctctcaagtcatgtctggtgtgtcta
gcctcttactgcgagactcatctccagcctcactataatgtagctccattgatgaagcac
aagctggtcaaagccaccacacaattacaggacaatatctgctctcatcatgacaaactg
atggagattttctgccggaccgaccagcagtgtatctgttatctgtgtaccatggatgaa
cataaaggccatgatacggtctcaatcactgcagaaaagactgagaaacagaagcagata
gggacaagtcagcagaaggttaaccagagagtccaggagagggagaaagagttgaaggaa
ctgcaacaggctgtggagtttctcagccgctctgcacaggcagcagtggaagaaagtgag
aggatctttacagagttgattgactccattgagagaaggcgctcagagatgaaggaactg
atcgtagcccaggagaattcagctgtgagtcaagctgaagccctcatggagcgtttggag
caggagatcactgagctgaagaggagagagattgagctggaaaagctgacacacacagag
gatcacatccatttcctggaggtagcttcactgagtgaccatctgtctgttattgcaaaa
ggaactcgttattctgggagttatcagtctctcgccagtcccagtgtattttcagacttg
cccaccatcgatgtccgtcctcttcagtactttgaggatgtgagtgaggctgtgtctaac
ctgagagagaaactggagggcatcttgaagagagaatggtgcagaatctccaccagagtg
aatctagtggatgttctacacccacccgagcccaagaccagagccgacttcttacaatat
tcatgtcggctcaccctggacgcaaacacgttatacagacaactctttctgtctgagcgg
aacagaaaggtgaaactgaagcgcaaaggctactcctaccacagtagtccagacagattc
actcaattgtgtcaggtgctgtgcagggaaggtctgtctgggcgctgttactgggaggtg
gagtggagtgggtggaagatttatgcaggcgtttcgtataaagacatcagccgatctggg
cctgcagatgattgtcaatttggacacaatgacaagtcctggagtttagagtgctgtagt
aatggttactttttccgacataataatgtaaagactgaagtggcacgccctcagtcctcc
agagtaggagtgtacctggatcaccaggcgggcactctgtccttctacagtgtctctgac
acaatgaccctcctccacagtgtccagaccagattcacgcagcccctctatcctgggttc
tggcttcattgctttaagaccacagctgagttatgtgagttagactag
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