Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379065
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Entry
139379065 CDS
T10872
Name
(RefSeq) splicing factor 1 isoform X1
KO
K13095
splicing factor 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139379065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139379065
Spliceosome [BR:
ocla03041
]
Complex A
Other components
Complex A specific factors
139379065
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
139379065
NCBI-ProteinID:
XP_070977908
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All DBs
Position
21:complement(42507952..42520158)
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AA seq
682 aa
AA seq
DB search
MATGANATPLGKLHPSIGAKRGFDAGPGAGLMPPPGPPVAFPSIPNFQPPIPNVSFPQAH
PVFTAVAAFPTPPQPPQGAGMQPQSDFGQKKARKRSRWNSETPDQKTVIPGMPTVIPPGL
TRDQEKAYIVQLQIEDLTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTRKK
IEEERHSLITDMVALNPEFKPPADYKPPATRVNDKVMIPQDEYPEINFVGLLIGPRGNTL
KNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRT
ILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQSTEPRSVTNTTLCTKCGG
AGHISSDCKFTSSFAAPRAGEPPQSAQDKARMDKEYLSLMAELGEAPVPSSGGGHSNNQN
SGHNRGSNNQPPPSRPPWMNSGQSENRNYHSMHGGHGGHGNQHGGHGNHGGHGGHGGHHN
FPPPMSNMGGHPMPPNNGMPPPWMQPPPPPMGQGHGHHMGLLPPPMMPPPPPPPNNQPPP
PPSGPLPPWQQQAPPPPPTSSMATSAPLPWQQNTTTTSSPGTGNLPPWQQPQQSAASAAQ
PPPPMGNPSMVPPPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPMDPSNFVTMMG
MGVPGMPPFGMPPAPPPPPPQN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggctacgggagcgaatgcaacccctctagggaagctgcacccgagtatcggcgctaaa
cgaggttttgatgctgggcctggtgcggggttaatgcctccacccgggcctcctgtggcc
tttccttcgataccgaattttcagccaccaattcccaacgtgtctttcccgcaagctcac
ccggtgtttactgcggtggctgcttttcccaccccaccacaaccaccccaaggtgccgga
atgcagccccagtcagacttcggtcagaaaaaagccaggaaaaggagccgctggaatagt
gaaacacccgaccagaagacagtcattcctggtatgcccaccgtcatcccgcctggactg
actcgggatcaggagaaggcctatatagtccaactgcagattgaagacctgactcgtaaa
ctgcgtacaggagacctgggaatccctgttaaccctgaggacagatccccgtctccagag
cccatctataacagcgagggcaagaggctgaacaccagggagtaccgcacacgcaagaag
atcgaggaggagcgtcattccctcatcaccgatatggtggcactcaaccctgagttcaag
ccccccgctgactacaagcccccagctaccagagtcaacgacaaggtgatgattccacag
gacgagtacccagagatcaactttgttggcctgctgattggaccgcgtggcaacaccctg
aagaacatagagaaggagtgctgtgccaagatcatgatccgtggtaagggctcggtaaag
gagggcaaggtgggccgtaaggatggccaaatgctgccaggggaggacgagccgctgcac
gccctggtcaccgccaacaccatggagaacgtcaagaaggctgtggaacagatccgcacc
atcctcaagcagggcatcgagacccctgaggaccagaacgacttgaggaagatgcagcta
agagagctggccagactcaacggaaccctgagagaggacgacaacaggatcctacgtccg
tggcagagcactgaaccccgcagcgtcaccaacaccaccctttgtaccaagtgtggcggt
gcaggccacatctcctcagactgcaagttcaccagctcctttgctgcgcccagggccggt
gagcccccccagtctgcccaggacaaggcccgtatggacaaggaatacctgtcccttatg
gcggagctgggcgaggcccctgtaccctcctctggtgggggacactccaacaatcagaac
agcggccacaacagaggcagcaacaaccagccaccgccgagccgtcctccctggatgaac
tctggccagtctgagaacaggaactaccacagcatgcacggaggccacggtggtcatggc
aaccaacacggtggtcatggcaaccacgggggtcatggaggtcacggaggccaccacaac
ttcccaccccccatgtccaacatgggaggacaccccatgccccccaacaacggtatgcca
cccccttggatgcagcccccaccgccccccatgggccagggacatggacaccatatgggt
ctgttgcctccacccatgatgccaccaccacctccacccccaaacaaccagcctccccct
ccaccctcgggtcccctgcctccatggcaacagcaggcccctccgccccctcccaccagc
agcatggccactagtgcaccactgccatggcaacagaatacgaccacaacgtccagtcct
ggcactggcaacctgcccccctggcagcagccccaacagtccgctgcctcggctgcccag
ccccctccccccatgggcaacccctccatggtcccccctccgcccggagtccagccccct
ctcccccccggcgccccacctccccctcctcccccaccccccggctcggccggcatgatg
tatgcccctccacctccccctccgcccatggatccctccaactttgtcaccatgatggga
atgggggtgccaggcatgccccccttcggtatgccccctgcgcctccaccgccacccccc
caaaattaa
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