KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379101
Entry
139379101         CDS       T10872                                 
Name
(RefSeq) period circadian protein homolog 1b isoform X1
  KO
K21944  period circadian protein 1
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ocla03400]
    139379101
DNA repair and recombination proteins [BR:ocla03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    139379101
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS
Other DBs
NCBI-GeneID: 139379101
NCBI-ProteinID: XP_070978014
LinkDB
Position
21:47167571..47183006
AA seq 1366 aa
MSYDDSNSAPGDDTWGRVGSTNEEEEEAGTGLSSPGSNNNHGSQSGTSDLANRVRGSSPS
GSGSGGSSGGDQRGPSSDDGERESSEGGGGSRGHQSRSSHCSSSQKDSGMMLENTESNKS
SQSQSPSPPSSSLAYSLLSASSEQDPPSTSGCSSNEQHQTARVQTQKEMLKALKELKVRL
PAECKGKGRSSTLDALQYALNCVKQVRANQEYYHQWSVEECHGCSLDLSAYTTEELDNIA
SEYTLKNTDTFSMAVSFLTGKVVYISPQGSSLLRCKPERLQGAIFSELLAPQDVNTFYSS
TAPCRLPAWATCMGSVSPRTDCHQGKSMFCRISADRAQGGEIKYYPFRMTPYQLTLRDLD
TSDLQPCCLLISERVQSGYEAPRIPADKRIFSTSHTPSCLFQEVDERAVPLLGYLPQDLV
GSPVLLYLHPEDRPIMVAIHRKILQSAGQPFDSSPMRMRARSGEYVTIDTSWSSFINPWS
RKVAFIVGRHKVRTSPLNEDVFTPLRGCEGRPVAPEIVQLSEQIHRLLVQPVHSGGSQGY
SSLTSNGSCSHEQRYRRTASSASDSKSTNAMEAMEAAVVALHKPMTFQQICKDVYMVKTS
GQQVFINSHNRALSRRHAVTALRATGEVEPIRSLIPEVVCPSKTPVFNTQQLMNEEPPSA
YSYQQINCLDSIIRFLDGCNVKRKFGSSSATSTSDGEKQQQETAGNEKGGPATSVTLVGD
SAGVPPLAMHSHKAKSVASVISQCSFSSTIVHVGDKKPPESDVVMENAPPTPMPATPTTT
RSPPTAIINPPPPKTTSPPSRRGGGLTKEVLSAHTQQEEQAFLCRFSDLSQLRVIAPSSA
LRCPLPNTNPRRRRACSPDYPAAGGSSGRRGAKRLKQQESSEQRCPLALGLTGPLRSPNV
VPMNSPPSSTCTLPMMPLGPPTTSSWPVSVGSQASLPSVPYPSGTLPLYPIYPPLSQPIQ
NQMVPPMMALVLPNYMFPQLHPNLSQMTTAMNTMGSPMPQPGSAMVTPGPQQFFNPSAGF
PFPGTNVMPCPMPTMPSLMQTAMPIQTQRPASGSSTPQSCSQVPVDQEGAESPLFHSRCS
SPLNLLQLVEESPSNRLEVATALAASAQQATIPSQGTQGRSPDDSKENANDSNQDGESTP
SDLLDLLLQEDSRSGSASSGSGSDSLGTVSNGCSSSGSGTSRSRSSRTSKYFGSIDSSEN
DHSRKQPAGGSRAGGDGEEQLIKCVLQDPIWLLMANTDHKVMMTYQLPTKDRETVLRQDR
EALRAMHKHQPRFTEDQKRELSQVHPWIRTGRLPRAINVSACMGCKSSPLPESTVDQGGE
ARREEEGHAAHSETQGNDQEMTTEEQEVTWPTGEKKARAGVTYMTH
NT seq 4101 nt   +upstreamnt  +downstreamnt
atgagttacgacgactcaaactccgcccctggcgatgacacttgggggcgagtgggaagc
accaatgaagaagaggaggaggcgggtacaggattgagctcccccggcagcaacaacaac
catggcagccaatcgggaacttcggacttggccaatcgggtgcgaggatcctctccaagt
ggatccggctccggtggctcgtctgggggggaccagaggggtcccagctcagatgatggg
gaaagggagtcgagtgagggagggggcgggtccaggggacatcagtccagaagttcccac
tgttcctccagccagaaggactcgggcatgatgctggagaacacagagagcaacaagagc
tctcagtcccagagcccgtctccccccagcagttctctggcctacagcctgctgtcagcc
agctcagagcaggaccctccttccacctccggctgcagcagcaacgagcagcaccagacg
gcccgcgtccagacccagaaggagatgctgaaagccctgaaggagctcaaggttcgcctg
ccggccgagtgcaagggcaaaggtcgctccagcaccctggacgccctccagtacgccctg
aactgtgtgaagcaggtgcgagccaaccaggagtactaccaccagtggagtgtggaggag
tgtcacggctgcagcctggatctgtctgcatataccactgaggagctggacaacatcgcc
tcagagtacaccctcaaaaatacagacaccttttccatggcggtgtccttcctgacaggc
aaagtggtgtacatctccccccagggctcgtccctgctgcgctgcaagccagagaggctc
caaggggccatcttctcagaactgctggctccccaagacgtcaacaccttctacagcagc
actgccccctgccgcctgcccgcctgggccacctgcatgggctctgtgtccccacggaca
gactgccaccaggggaagtccatgttctgtcgcatcagtgccgaccgggcgcagggaggc
gagatcaaatactaccccttccgcatgaccccctatcagctaaccctgagggacttagac
acgtcagacctccagccctgctgcctgctcatctctgagcgggtacagtccggatacgaa
gctcccaggatccctgctgacaagcggatcttttccaccagtcacactcccagctgtctc
ttccaggaagtagatgaaagggctgtgccgttgttgggctaccttccccaggacctggtg
ggaagccctgtactcctctacctccacccagaggacagaccgatcatggtggccatacat
aggaagatcctccagtctgcaggccagccctttgacagttctcccatgaggatgcgtgcc
cgcagtggggagtacgtgaccatcgacactagctggtcctccttcatcaacccctggagc
aggaaggtggccttcatcgtgggccgccacaaagtccgaaccagccccttgaacgaggac
gtgttcacccctctgcggggctgtgagggccgccccgtggccccagagatcgtgcagctg
agcgagcagatccaccgtctcctggtgcagccggtccacagtggagggtcgcagggctac
agcagcctgacctcaaatggatcctgctcccacgagcagcggtaccgacgcacggcctcc
tccgcctccgacagcaagtccaccaacgccatggaggccatggaggcagccgtggtcgcg
ctgcacaaaccgatgacgttccagcagatctgtaaggacgtgtacatggtcaagaccagc
gggcagcaggtctttatcaactctcacaaccgagccctgtcccggcgacacgctgtcaca
gcgctccgagccactggagaagtggagcccatcaggagtctgatcccggaggtggtgtgt
ccatccaaaaccccggtgttcaacacccagcagctgatgaatgaggagccccccagtgcc
tacagctaccaacagattaactgtctggacagcatcattaggttcttggacggctgtaac
gttaagaggaagtttggctcgtcctctgccacgtccacatcggacggagagaaacaacaa
caggaaaccgctgggaatgaaaaaggtggtccagctacctcagtcaccctggttggggac
tcagcgggggtaccccccctggccatgcacagccacaaggcgaagagtgtagcctcagtc
atctctcagtgcagcttcagcagtaccatcgtccacgtgggagacaagaagccccccgag
tcagacgttgtcatggaaaatgctcctcccactcctatgccagccactcccaccacgacc
aggtctccaccgaccgccatcattaaccctccaccgcccaaaacaacctctccacccagc
cggagaggaggtggcctgaccaaggaggtgctctctgctcacacacagcaggaggagcaa
gccttcctctgtcgcttcagtgacctgagccagctgagggtgattgctccatcctcggcc
ctgcgttgcccgctccccaacaccaacccccgccgcagaagagcgtgttcccctgactac
cctgcagctggaggcagcagtggtcgccgtggagccaagaggctgaagcagcaggagtcc
tcagaacagaggtgccctctggctttaggcctgaccggacccctccggagccccaacgtc
gtccccatgaattcccctcccagctccacctgcaccctcccaatgatgcccctggggcct
cccaccacatcctcctggcccgtctccgtaggatcccaggccagcctgccctctgtgccc
tacccctcgggtacgctccccctgtaccccatctatcctcctctctcccagcccatacag
aaccagatggtgcctcctatgatggccctggtgctgcccaactacatgttcccacaactt
caccccaacctctcccagatgaccacagccatgaacacaatgggaagccccatgccccag
ccgggatccgccatggttacccccggcccacagcaattcttcaaccccagcgctggtttc
cccttccccggtaccaacgtcatgccatgccccatgcctacgatgccctcgctcatgcaa
actgccatgcctatccagacgcaacggccagcctctgggtccagcacccctcagtcatgt
agtcaagtaccagtcgaccaggagggtgcagagtcgcccctcttccactctcgctgctcc
tccccgctcaacctgctgcagcttgtggaggagtcgcctagcaaccggctggaggtcgcc
acggcgctggctgcttccgcgcaacaggccacgatcccctcacaagggactcaggggaga
tcgccagatgactccaaggagaacgccaatgattccaaccaggatggtgaatctaccccc
agtgacctactggacctgctcctgcaagaggactcccgctcaggctccgcgtcctctggg
tcgggttctgactccttgggcactgtgtccaatggctgcagctcctcaggcagtggaact
agtcgcagtcggagtagccgcaccagcaagtactttggcagcatcgactcgtcagagaac
gaccactcccgcaagcagccagcaggtggcagcagagcaggaggagacggggaggagcag
ttgattaagtgtgtcctgcaggatcccatctggctcctcatggccaacaccgaccacaag
gtgatgatgacgtaccagctgccgaccaaggacagggagacggtgctgcggcaggaccgc
gaggccctgcgggccatgcacaaacaccagccccgcttcaccgaggaccagaagagagaa
ctgagccaggtccacccctggatacgtaccgggcgcctgccccgcgccatcaacgtctcg
gcatgtatggggtgcaagtcttcccccttaccagagagcaccgtggaccagggaggagag
gctcgcagagaagaggaggggcatgcggcgcactctgaaacacaaggcaacgaccaggaa
atgacaacagaggagcaggaagtgacctggccaacgggggagaagaaagcaagggctggc
gtaacctacatgacccactga

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