Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379190
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Entry
139379190 CDS
T10872
Name
(RefSeq) DNA polymerase nu
KO
K16618
DNA polymerase nu [EC:
2.7.7.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
139379190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139379190
Enzymes [BR:
ocla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
139379190
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
A-family DNA polymerase
139379190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
DNA_pol_P_Exo
TetR_C_6
Motif
Other DBs
NCBI-GeneID:
139379190
NCBI-ProteinID:
XP_070978111
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Position
21:complement(32135083..32213864)
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AA seq
1120 aa
AA seq
DB search
MERDGFGASHSLKRDGFGASHALQRDGIGEKLLFNEGDVTGGHRDSTESPCVVGLADQQG
TLHGDTAQSEEEIVTGGGPRENLSERDPFKRKRLFGDMTTDNQRGMGGGEMGGRVERERK
DDINKGGLKKKMERKNSRSSTKPHQQRKVSPSLGQMSDGEGQGVTETDSHPEERRNMDGP
LVTAAQRNSGGNTGDASFDWKPVECAKERGDMENLGKAGDGGSRERGLSIDPALTNPSLA
GHGRAAGLGSGLTSIRASGEEESSGHHPLLSAQQPPLTPTFSLKSKHGTPLPKIALFRWP
VKWEPPQSCQEKARTLQRGQEWCKTQTPKHPDLTPAFSLDPRAKTKTLHKTEGTKSVALT
PNPPHRPPANPVRPRQGVPMGERGLESTRDHSSSDTPQHRSSKTPKPPKPKRAKPGPNQC
QLTPETEPEGGSGAGDPRAQSNQSKTCLTTAMISDPRVRDAGKLSPEERGRVLEEAGQAS
ALVLTMVYQDGTTQMDPEQKLSPSVCGVLVMLKRDLDQTGPVPGPEGVAQRDSLVYLRLE
QKPAWAQSHQDHNLDLFNREMLLQVVSGSQLVVCYKAKDLLRTALQHYRPDLHWKQFSSC
RVQDPQVAAWLLDPADPSSCFTNLLTKHCRTPPRTPTPALGARKVYQVISSLSLLYQLNM
ELRSKLQSQGLWELYSNMELTMIPVLAAMESHRIHVDTESLKTTSEMLGTKMKQLEHEAH
QAAGQMFLVSSSTQLRTVLFEKLRLQERCENKKLPKTLNKQQQSTSEAVLLQLQDLHPLP
KIILEYRQVHKIKSTFVDGVLSCMMSKNFISSTWYQTSAVTGRISAKHPNFQALPRQPVQ
ITKKQYVQGKEAEVVTVHPRAMFIPQDGYTFLAADFCQVELRLLAHLSSDPELQRIFNNP
QADVFTMLASQWKGVSEGEVSSEDREHAKRIVYSVVYGAGRERLSGILGVSAEQASHFQD
SFLHTYREVQTFIHTTIQQCHKRGYVVSIMGRRRTLPHIHSTDWGVRMQAERQAVNFVVQ
GSAADLCKMAMIRIFSQVSSSSSLSARLIAQLHDELLYEVEDSQVGEFAVLVKNTMESLQ
HIDCLGVHLKVPLKVAVSSGKSWGSMSELHLPQTSLPPSS
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggagcgagatggttttggagcaagtcattcattgaagagagatggctttggagcaagt
catgctttacagagggatggcattggagaaaaactgctattcaatgagggtgacgtcact
gggggccacagggacagcacagaaagcccgtgtgtagttgggttagctgatcagcagggg
acgctgcatggagacacagcccagtcagaggaggagatcgtgacaggaggaggaccaagg
gagaacctcagcgagagagacccctttaagaggaaacggctcttcggtgatatgactact
gacaaccagagagggatggggggtggagagatggggggaagagtggagagggagagaaag
gatgacatcaataaaggagggttgaagaaaaagatggagaggaagaacagcaggagtagt
accaaaccccaccagcagaggaaggtgtcaccctcactggggcagatgagtgatggagag
ggccagggggtgacagagacggatagtcacccagaagagagaaggaacatggatgggcca
ttggtgacagctgcacagaggaacagtggaggaaacacaggcgatgcgagcttcgactgg
aagccagtggagtgcgcgaaggagcggggtgacatggagaacttggggaaggctggtgat
ggaggctccagagagagggggttgagtatagatcctgcactaaccaacccctctcttgct
gggcatggaagggccgcagggctggggtccggcctgacctctatacgtgctagtggtgag
gaggagagcagcggccatcaccctctcctctctgcccaacaaccgcccctgacccctacc
ttctccctcaaaagtaaacacggcacccctctgcccaaaatcgcccttttcaggtggccg
gtgaaatgggaaccccctcagtcctgtcaggaaaaagcaaggaccttgcaaaggggccag
gagtggtgcaaaacccaaacccccaaacacccagacctgaccccagcctttagcctagac
ccccgagccaagaccaagaccctccacaagactgagggaaccaagagtgttgctctaacc
cctaaccccccacatcgacccccagccaacccagttaggccaagacagggggtcccaatg
ggggagagggggcttgaatcaaccagggaccattctagttcagacactcctcagcataga
tcctccaaaacccccaaaccacccaagccgaagcgggccaaacctggacctaaccagtgt
caactcaccccagaaactgaaccagaggggggaagcggtgccggtgacccccgggcccag
tccaaccaatccaaaacctgtctgactacagccatgatctctgaccccagagtaagggat
gctgggaagttgagtcctgaagagagaggcagggtgctggaggaggcagggcaggccagt
gcgctggttctgaccatggtgtaccaggacggaaccactcagatggacccagaacagaag
ctcagtccgtcagtgtgtggggtgctggtgatgttgaaaagagatctggaccagactgga
ccagtaccaggaccagagggggtggcacaacgagacagtctggtctacctcagactggaa
cagaaacctgcatgggcccagagccaccaagaccacaacctagacctattcaatagagag
atgctgctgcaggtagtgtcagggtctcaactggtggtgtgttacaaggccaaagacctg
ctccgtacagcactgcagcactacagaccagacctacactggaaacaattctcatcttgt
cgcgtccaggacccccaggtagcagcctggctgttggacccagctgacccctcttcctgc
ttcaccaacctgctcaccaaacactgtaggacaccccccagaactcccacacctgccctg
ggggcaaggaaggtgtaccaggtcatctccagtctgtctctgctctaccagctgaatatg
gagctacgctctaaactacagagccaaggtctgtgggagctgtactctaacatggagctg
actatgatccctgtgctggcagccatggagagccacaggatccatgtggacacggagtcc
ctaaagacaacatcagagatgctggggactaagatgaagcagctagagcacgaggcccac
caggcagcaggccagatgtttctagtgtccagcagcacccagctcaggacggttctgttt
gaaaagttgcgtctgcaggagcgctgtgaaaacaagaagctccccaagactctcaacaaa
caacagcagtctacatctgaggctgttttgttgcagctccaggacctgcaccccctgccg
aagatcattctcgaatacagacaggttcataagatcaagtccaccttcgtcgacggggtt
ctgtcttgtatgatgagtaagaacttcatctcgtccacatggtaccagaccagtgcagtg
actggaagaatctctgccaaacacccaaacttccaggccctcccaaggcagccggtgcag
atcactaagaagcaatatgttcaaggaaaggaagcggaggtggtgacggttcacccacgg
gccatgttcatcccccaggatggctacaccttcctggctgcagatttctgccaggtggaa
ctgcgtctgctggctcacctctcgtcagatcctgagctgcagaggatcttcaacaaccca
caggccgacgtcttcaccatgctggcctcacagtggaagggtgtgagtgaaggagaagtg
agttcagaggatagagagcatgccaagcgtatcgtctactctgtggtgtatggagcaggt
agggagcgtctgtcgggcatcctgggtgttagtgctgaacaggccagccacttccaggac
agcttcctccacacctacagagaggtccagaccttcatacacaccaccatccagcagtgc
cacaaacgaggttacgtggtgtctattatgggccggcgaaggacacttcctcacatccac
tcaacagactggggagtccgcatgcaggctgagagacaggccgtcaactttgtggtccaa
gggtcagctgctgacctgtgtaagatggccatgatccgtatcttctctcaagtctcctcc
tccagctctctctccgccaggctgatagctcagctccatgacgagctgctctacgaggtg
gaggactctcaggtgggggagttcgcagtgttggtcaagaacactatggagtccctgcaa
cacatcgattgtctgggagttcatctcaaagtccccctgaaggtggcggtctcaagtggc
aagtcctggggctccatgtccgaactacacctcccccaaacatctctccccccctcttcc
tga
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