Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379386
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Entry
139379386 CDS
T10872
Name
(RefSeq) transcription factor Sox-19b-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139379386
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139379386
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
Motif
Other DBs
NCBI-GeneID:
139379386
NCBI-ProteinID:
XP_070978294
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Position
21:complement(29220252..29223416)
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AA seq
287 aa
AA seq
DB search
MYNMMEHELKPSGQQQSHQTAMSPVTGNSHPGSKSLCPPGGDPMDKVKRPMNAFMVWSRG
QRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRAVHMKDYPDYKYKPRR
KSKPLLKKDNQMGKYPLSAGNLLAAAQGQGGSPRMESYGWGPAGGYAGMQSEALGYTQQL
HRYDLSALQYPQAMTAAQTYMNGANTYSPMSYSSSHQQPVMSMVKPEPVSHSPTGGPNHH
RGPLQGDLRDMISMYIPGGDTTDPVSQRGGYSVQQHYLSGTVPLTHI
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaacacgagttgaagccctctgggcaacagcagtcgcaccaaacc
gccatgtctccggtcaccggcaactctcacccggggtccaaatccctgtgtcccccgggc
ggggaccccatggacaaggtcaaaagacccatgaacgcattcatggtctggtctaggggc
cagcgccgcaagatggcccaggagaaccccaagatgcacaactctgagatcagcaagcgg
ctgggcgcggagtggaagctactaactgatgctgagaagcgtccattcattgacgaagca
aagcgcctcagggcggtgcacatgaaggattaccccgattacaagtacaaaccacgccgt
aaatccaagcccctgctcaagaaggacaaccagatgggaaagtaccctctctctgccggg
aacctgctggccgccgcgcagggccaaggtgggagcccaaggatggagagttacgggtgg
ggcccggcgggaggttacgccgggatgcagagcgaggccctgggctacactcagcagctg
caccgctacgacctgtccgcgctccagtacccccaggccatgaccgcagcacagacatat
atgaacggcgccaacacttacagccccatgtcttacagcagcagccaccagcagccagtc
atgtccatggtgaagccagagccagtgtctcactccccgactggtggacctaaccaccac
cgcgggcctctccagggggacctgcgggatatgatcagtatgtatatccccggaggggac
accactgacccggtctcccagagaggcggctacagcgtccagcaacactatctcagtggg
actgtgcctctcactcatatctag
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