Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379526
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Entry
139379526 CDS
T10872
Name
(RefSeq) cyclic nucleotide-gated channel alpha-1
KO
K04948
cyclic nucleotide gated channel alpha 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
139379526
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139379526
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
139379526
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CLZ
cNMP_binding
MDM10
PAP2_3
Sec62
GrpE
Tim54
Pox_Ag35
DUF6474
Motif
Other DBs
NCBI-GeneID:
139379526
NCBI-ProteinID:
XP_070978446
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All DBs
Position
21:51832351..51851575
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AA seq
609 aa
AA seq
DB search
MNNSNSNEEEEQKKKTSKKERKEKKERKEKKEKEKQEKRERKEQKKKEKEEKELKEKEEK
EKKEKEEKAKAEAPKEITVIDPAGNMYYNWLLVITIPVMYNWTLIIARASFEELQTDFLI
YWFIIDCVSDVVYLADMVFRTRTGYLEQGLLVKDQKKLIDRYINSLQYKLDLISMIPTDI
FYVYFGLNYPEIRLNKLFRINRMLEFFQRTETRTNFPNVLRISNLVMYIVIIIHWNACLY
YSFSKAIGFGANKFVYPDTTDPEFGRLVRKYAYSMYWSTLTLTTIGETPPPVQNSEYFFV
VTDFLVGVLIFATIVGNVGSMITNMNAARANFQARIDAIKQYMTFRKVTKDLEKRVIKWF
DYLWTNKKAVDEREVLKFLPDKLRAEIAINVHLDTLKKVRIFADCEAGLLVELVLKLQPQ
VYSPGDYICKKGDIGREMYIIKEGKLAVVADDGIKQFVVLSDGSYFGEISILSIKGSRAG
NRRTANIRSVGYSDLFCLSKDDLMEALSEYPDAKAMLEEKGRQILMKDNLLDLEVAAQGP
DPKDMEEKVERMTATLESLQTRYARLLAEHEAGQSRLKRRVTRLEKKVVAPVQEVEEIGV
EMGTVATTE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacagcaacagcaacgaggaagaggaacagaagaagaagacaagtaaaaaggag
aggaaagagaaaaaggagaggaaagagaaaaaggagaaagaaaaacaggagaaaagggag
agaaaggaacagaagaagaaggagaaagaggagaaggagttgaaggagaaagaggagaag
gagaagaaggagaaagaggagaaggccaaagctgaagcgcctaaagagatcacggtgata
gacccagcaggtaacatgtattataactggctccttgtcatcaccattcctgtaatgtac
aactggaccctcatcatagccagggccagttttgaggagctccagacagactttctgatc
tactggttcatcatagactgtgtctctgatgtggtctacctggcagatatggtgttcagg
accaggacaggttacctggaacagggtctgttggtgaaggatcagaagaagctgatagat
cgctacataaacagtctccagtacaaactagacctgatctccatgatccctactgacatc
ttctatgtgtacttcggactcaactaccccgagatacgactcaacaagctgttcagaatc
aacaggatgttggagttctttcagaggacagagactaggaccaacttccccaacgttctg
cgtatctccaacctcgtcatgtacatcgtcatcatcatacactggaacgcttgtctctac
tactctttctccaaggcgattggtttcggagctaataagtttgtgtaccccgacacgacg
gaccctgagtttggccgtttggtccggaaatatgcctacagcatgtactggtcgaccctg
acactcacaactatcggagagactcctccccctgtacagaactctgagtacttcttcgtc
gtcacagacttcctggttggcgtgttgatctttgctaccatcgtcggtaacgtcggttcc
atgatcaccaacatgaacgctgccagggcaaacttccaggccaggatagacgccatcaaa
cagtacatgactttcagaaaggtcaccaaggacctggagaagagggtgatcaagtggttt
gactacctgtggaccaataagaaggcagtagatgagagggaggtgctaaagttccttcct
gataaactcagggctgagatcgctatcaacgtacacctggacacactgaagaaggtgcgt
atctttgctgactgtgaggctggtctcctggtagagttggtattgaagcttcagcctcag
gtctacagtccaggtgattacatctgtaagaagggagacatcggacgagagatgtacatc
atcaaggaagggaagctggccgttgtcgccgacgacgggatcaaacagttcgttgtcctt
agcgacgggagctacttcggggagatcagtattctgtccataaagggttccagggctgga
aacaggaggactgctaacatcaggagtgttgggtactctgacctgttctgcctctctaaa
gacgacctcatggaggccctgtcagagtatcctgatgctaaagccatgttggaggagaag
ggacggcagatcctgatgaaggacaacctgctggacctggaggtggcggcgcagggcccg
gaccccaaggacatggaagagaaggtggagaggatgacagcaacgctggagtccctccag
acgcgatacgcccggctcctcgccgaacatgaggcgggccagagcagactgaaacgcaga
gtcaccaggctggagaagaaagtggtggctccagtccaggaggtcgaggagatcggggtg
gagatgggtaccgtggcaaccacagaatag
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