Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379637
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Entry
139379637 CDS
T10872
Name
(RefSeq) nuclear pore complex protein Nup50-like isoform X1
KO
K14295
nuclear pore complex protein Nup50
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139379637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139379637
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139379637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP50
Ran_BP1
Motif
Other DBs
NCBI-GeneID:
139379637
NCBI-ProteinID:
XP_070978546
LinkDB
All DBs
Position
21:complement(2881680..2905624)
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AA seq
489 aa
AA seq
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MAKRIADKELTDRNWDQEDEGEECSDGVHQAGTFSIASDDVMKSRPIKKAKRRAAGSEGQ
SGGAFTVFKGFSLAPTSGTGPAAEGITAFSGFGNGVGFKPLSGLSNGNSVKPVTPALTGF
TSPTATKTTTPGSLTFSGPSSSAVITGQQSNGSSPAVSSRSLSSSLSTNSGNNQEYSRQL
TALNCSVRDWITKHVNGNPLCDLNPIFRDYEKHLASIDKKYGGSGGTGAVTGAAVVADGG
SESRSRAEEPEEKRAVSTAPPPSSSAAGSTATAPVFSFSKDKDGITTAPGESSAAPAPIP
AGISFSLGQKGNSSVLGSLSTGGAPGVSSSSLFGGAAPPAFSFSGAKAEAAPTQTTDENG
EESDEPPKVEVQEIKEADAFYSRKCKLFYKKETEFKEKGVGTLHLKTTSDGKTQLLVRAD
TNLGNILLNIMVQPSILCSRMGKNNVMVMCVPNPVVDHNNPTNPVAMLIRVKTAEDADEL
HNILEEKKA
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaggattgccgacaaagagctgactgaccggaactgggaccaggaggatgag
ggagaggagtgttctgatggtgttcatcaggcagggacattttccatcgctagtgatgat
gtgatgaagagcaggcccatcaagaaggccaagcgtcgggctgctggttcagaggggcag
agtggaggagcattcacagtgtttaaagggttctccctggcccctacatcgggaaccggg
ccagccgctgaggggatcacagccttctccgggttcgggaatggggtagggtttaaaccc
ctgtctgggctgtccaatgggaacagtgtcaaacctgtcactccggccctcaccgggttc
acctcgcctactgccaccaagaccaccacaccaggttcattaacattcagcggcccctcc
tccagtgctgtcatcacagggcagcagtctaatggttcctcccccgcggtttccagtcgg
tctctcagctcctctctctccactaacagcggtaacaaccaggaatacagtaggcagctc
acagctctcaactgctctgtcagggactggatcaccaagcacgtcaacggaaaccccctc
tgtgacctaaaccccatcttcagggactatgaaaagcacctggccagcatcgataagaag
tacggagggagtggagggactggagctgtgactggagctgctgtggtggcggacggaggc
tcagagagcaggagcagagcagaggaaccagaggagaagcgggcagtcagtaccgcacca
ccaccctcatctagcgccgccggctcgaccgccacggccccggtgttctccttcagtaag
gacaaggacggcatcactacggccccgggggagagctcagccgctcctgctccgatcccc
gctggcatcagctttagcttgggccagaaggggaacagctcagtgttggggtctctgagc
accggaggagctcctggtgtctcctcctcctccctgtttggaggcgctgctcctcctgcc
ttctccttcagtggggccaaagcggaggctgcccccacccagaccacagatgaaaacggg
gaggagtctgatgaacctcccaaagtggaagtccaggagattaaggaggctgacgcgttc
tactccagaaagtgtaaactgttctataagaaagagacggagttcaaggagaagggagtt
ggaacgctgcatctgaaaaccacctcagacggaaagacacagctgctagtccgcgctgac
accaacctgggtaacatcctgttgaacatcatggtccagccctccatactctgttccagg
atgggaaagaacaacgtgatggtgatgtgtgttcctaaccctgtcgtggaccacaacaac
cctaccaaccctgtcgccatgctcatcagggtcaaaacagcagaggacgctgatgaactg
cacaacatactggaggagaagaaagcttag
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