Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379732
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Entry
139379732 CDS
T10872
Name
(RefSeq) POU domain, class 2, transcription factor 2-like isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139379732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139379732
03021 Transcription machinery [BR:
ocla03021
]
139379732
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
139379732
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
139379732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pou
Homeodomain
POU2F1_C
HTH_31
Motif
Other DBs
NCBI-GeneID:
139379732
NCBI-ProteinID:
XP_070978593
LinkDB
All DBs
Position
2:14384413..14515846
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AA seq
597 aa
AA seq
DB search
MDFCNMWVPEIRMSKPVEVENTGADSPMESTDSERNGPDKNHQLQQISPFHLSPTLSSNK
NKMEECGEMSPGPPPHHSHAPSQTPLPHTQLMLTSSQLAGDIQQLLQLQQLVLVPGHHLQ
SPQFLLQQHQGQQGLLSTPNLIQLPQQNQGSLLSAPRLGLQAQRDKAMEGSGVMTSVSSV
TSHPEEPSDLEELEVFARTFKQRRIKLGFTQGDVGMAMGKLYGNDFSQTTISRFEALNLS
FKNMCKLKPLLEKWLNDAETMSTDSTMPSPSSLSSSSMGFEGLPGRRRKKRTSIETNVRV
ALERAFITNQKPTSEEILCIADQLSMEKEVIRVWFCNRRQKEKRINPNSATPPLPSQLPQ
APPTHKPPCYSPHMMSSQLSQAVTSLSTTLTTMSSFSPHTPSGPTHSSLSSASSPVTPPR
STASPAPPSHSTLSLNTGLWRLGKKNGDVSNYITDFAANLRNTVMGVNTGNQALNQALLS
NNPLATIQALAASGGQLPLSSLEGGSKVLLGGAGGQGGGLQSSFFLNHPAFLHMGQNPGA
GLVSAAVAKASQPSPFPSTSSISPTPCSPSPCSSPASSCDFNELAHSPSSLGGAKIE
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggacttctgcaatatgtgggtaccagaaatcaggatgtcaaagccagtagaggttgag
aacacaggggctgactctccaatggagagcacagattcagagcggaatggtcctgataaa
aaccatcagcttcagcagatcagtccctttcacctttctccaaccctcagcagcaacaag
aataagatggaagagtgtggtgagatgtccccgggccctcctccccaccacagccacgcc
ccctcacagacgcccctcccacacacacagctcatgctgaccagctcccaactggcaggg
gacatccagcagttgttgcagctgcagcagttggttctggtgccaggacaccacctacag
tctcctcagttcctcctccaacagcaccaagggcagcaaggactactatcaacaccaaat
ctgattcagctacctcagcaaaaccaagggagcctcctgtccgctcccaggctggggctc
caagcacagagagacaaggctatggagggcagtggggtcatgacctctgtgtcctctgtg
acctctcaccccgaggagcccagtgaccttgaggaactggaggtgttcgcccgcaccttc
aaacagagacgcatcaaactgggctttacacagggtgacgtgggaatggccatggggaag
ctatatggtaatgatttcagccagaccaccatctctcgcttcgaggccctcaacctgagc
tttaagaacatgtgcaaactcaaaccactactggagaagtggctcaatgatgcagagacc
atgtccacagacagtactatgcccagccccagctctctgtcctcttcctcaatgggcttc
gagggcctgccgggccgacgcaggaagaaaagaaccagcatcgagactaacgtccgcgtg
gccctggagagagccttcatcacgaaccagaagcctacctcagaggagatcctgtgtatc
gcggaccagctcagcatggagaaggaggtgatccgcgtgtggttctgcaaccgccgacag
aaagagaagcgtatcaaccccaacagtgccacccctcccttgcccagtcagctcccccaa
gccccaccgacacacaaacccccctgctacagtccacacatgatgtccagtcagctgtcc
caggcagtgaccagcctcagcaccacattgaccaccatgtcatcgttctcccctcatacc
cccagtggtcccacccactcatctctcagctctgcctcctctccagtgactcctcctcgc
agcacagccagcccagcccctcccagccacagcacactgagtctcaacacaggcttatgg
cgtttgggtaaaaagaatggtgacgtgtctaactacatcaccgattttgctgcaaacttg
aggaacactgtgatgggagtaaacacagggaaccaggctctgaaccaagctctcctcagc
aacaaccctttggctactatacaagctctagcagccagtggtggccagctgcccctttcc
agtcttgaggggggcagtaaggtgttgctgggtggtgcaggggggcagggagggggtctc
cagtcctctttcttcctcaaccaccccgctttcctccacatgggccagaatcctggtgct
ggattggtcagcgctgccgtagccaaagcatcccagccctcccctttcccctccaccagt
agcataagccccaccccctgctccccctccccttgctctagccccgcctcttcctgcgac
ttcaatgaattggcacacagcccatcctcgttgggaggggctaagattgagtga
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