Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380051
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Entry
139380051 CDS
T10872
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like
KO
K23619
collagen type XXVIII alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ocla01002
]
139380051
Peptidases and inhibitors [BR:
ocla01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
139380051
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
139380051
NCBI-ProteinID:
XP_070978620
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Position
22:complement(7708838..7741323)
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AA seq
1281 aa
AA seq
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MLFPAVTWFLLVAGLLSVWAQDYYEERTVNKRPRGRGAQLQAPAIATNVQKHSRQAILDE
DCGLEITFLLDSSESAKENHEQEKRFAMDVVDRLQAARLQTGRSLSWKAALLQYSSHVII
EQTFKQWRGTDNFKSHITPIVYIGHGTYTTYAITNMTKMYLEESSPGNIKVAMLLTDGIS
HPRNPDIFSAAADAKNQGVKFFTVGITRAANESANVAQLSLLASSPASRYLHNLQDIDIV
EKVLKEITDLADEGCPPAQQCACEKGERGLSGLAGKKGRPGDDGAPGLKGLKGEGGLSGL
PGRDGGEGKSGYKGERGERGECGTPGMKGDRGPEGPMGTRGVRGLQGLPGPQGDVGPEGP
QGKKGDRGQAGPAGIQGENGIGLPGPKGDLGFQGKPGPPGPPGLSEYGQPGPQGPQGFQG
EKGPHGEGLPGPKGDRGLAGPRGPRGQTGAGIKGEKGEFGPPGHPGLVGLTGAGIQGEKG
VEGPRGPPGGRGPQGEGLPGPKGDQGFPGELGATGERGVGEPGPKGELGTSGLAGLPGLP
GEDGAPGQKGEAGVAGIRGPDGAAGIGTQGEKGDQGQRGIRGLHGPPGMTGPSGAKGEPG
TPGRLGMPGLPGRAIAGPKGDLGPPGPSGPTGETGYGLPGPKGDRGNPGPTGPFGSKGEG
FPGPVGPPGLPGLQGEQGPEGIGIPGPKGDIGFRGLPGLPGPKGKGVQGPPGNIGRKGPP
GPNGPPGEGLQGPKGEQGSQGVTGPRGPIGEGFPGGKGDRGLQGERGNKGVKGGMGDSGV
PGESGRPGVKGEVGLTREDIIKLIKEICGCGIKCKERPMELVFVIDSSESVGPENFEIIK
DFVTALVDRTTVGRNATRIGLVLYSLDVHLEFNLARYMTKQDVKQAIRKMSYVGEGTYTS
TAIRKATQEAFYSARTGVRKVAIVITDGQTDKREPVKLDIAVREAHAANIEMYALGIVNT
SDTTQAEFLRELNLIASDPDSEHMYLIDDFNTLPALESKLVSQFCEDENGALVLNRNTNG
FGRNGNNGYGNNGYGNNGYGNNGHGNNGHGNNGHGNNGHGNNGQGNSGQGNNGQGNNGQG
NNGQGNSGQGNGNTSNEDPILNPSGRTSSQSHIRGRGDNFDLPLNAGPLPVQVQVDDEEG
EDLDVRTHSRGGSTVAVANKTVSIFPAKESSHSNTAVSSSGSASSSSGTTGSASSSSEGQ
FQPVSIPIPNSIFPQESVSLNPRCNLSLDQGTCREYNIQWYYDKQANSCAQFWYGSCEGN
ANRFETEDACKKTCVLSRTAG
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgttgttccctgctgtgacctggttcctgttggtagcagggctgttgagtgtctgggct
caggactactatgaagagagaacagtgaacaagagacccaggggcaggggggcccaactg
caagctccagccattgcaactaacgtgcaaaaacatagccgacaagccattttagatgag
gactgcggtctggagattacctttctgctggacagctctgagagtgccaaggagaaccat
gagcaggagaagcgctttgccatggatgtggtggacaggctccaggccgcccgtctgcag
acgggccgcagtctgagctggaaggcggccctgctgcagtacagcagtcacgtcatcatc
gagcagaccttcaagcagtggaggggcaccgacaacttcaagtcgcacatcacccccatt
gtctacatcggccacggcacctacaccacctacgccatcaccaacatgaccaagatgtac
ctggaggagtccagcccaggcaacatcaaggtggccatgctgctcactgacggcatctcc
caccccaggaatccagacatcttctcagctgccgctgacgccaagaaccagggggtgaag
ttcttcacggtgggcatcacccgtgcagccaacgagtcagccaacgtggcccagctgagt
ttgttggccagttctcctgcctcccgatacctccacaacctgcaggatattgacattgtg
gagaaagtcctcaaagaaattactgacctggctgatgaagggtgtcccccggcccaacaa
tgtgcctgtgagaagggcgaaaggggactcagtggcttagccgggaagaagggtcgccct
ggagatgatggagcccctggtctcaaaggattgaagggagagggaggactaagtggactt
ccaggtcgggatggcggagaaggaaaatctggttacaaaggagagaggggtgagagaggc
gagtgtggcactccaggaatgaaaggggacaggggtcctgagggcccaatgggcaccaga
ggagtcagaggtctccagggtttacccggtccacagggtgacgttggacctgagggccct
cagggtaagaagggtgatcggggtcaagctggcccggccggaattcagggagaaaatggt
attggacttcctggaccaaagggtgatctgggattccagggaaaacccggcccccctggt
ccgccagggttgagtgaatatggccagccagggcctcaagggccacaaggttttcaaggg
gagaaaggaccccacggagaggggctccctgggccaaagggagaccgggggctggccgga
ccgagggggccaagaggacagacgggtgcaggaatcaaaggagaaaagggtgagttcggg
cctccaggtcatccaggacttgttggacttacaggagcgggcatccagggggagaaggga
gtggagggtcccagaggtccacctggaggcagaggacctcaaggagagggcttacctgga
cctaagggtgatcaaggtttcccaggagagctcggagctacaggggagagaggcgttggt
gagccagggccaaaaggtgagcttggtacatctggcctggctggcttaccaggtcttcca
ggcgaggacggggctccaggacagaagggtgaggcgggtgtagctggtataagaggtcct
gatggagcagcagggatcggcacccagggcgagaagggagaccagggtcagaggggcatc
cgtggattacatggacctcctggcatgaccggaccctcaggggcaaagggggagcctggc
acaccaggccgactgggcatgccaggactaccgggacgggccattgcaggtcccaagggt
gatctaggcccacctggtccctctgggccgactggagagacaggctatgggctacctggg
ccaaagggtgaccgtggtaatcctggtccaacaggaccttttggatccaaaggtgaaggt
ttccctggcccagtgggtcctccaggccttccaggtctacagggagagcagggccctgag
ggcattggcatcccaggacctaagggagacattggcttcagaggattgccaggtttgcca
ggcccaaaaggaaagggtgtgcaaggaccaccgggtaacattggaaggaaaggaccccct
ggtccaaatgggcccccaggggaaggtctgcagggccccaagggtgagcaggggtctcag
ggtgtgacagggccaaggggacccataggggaaggattcccaggaggtaagggtgaccgt
ggcttgcagggtgagagaggaaataagggtgtaaaggggggcatgggagattctggggtt
cctggagagtctgggaggccaggagtaaagggtgaagtggggcttacaagagaagacatc
attaaattgatcaaggaaatatgtggatgtggaatcaagtgcaaggagaggccaatggag
cttgtattcgtcattgacagctcagagagcgttggtccggaaaactttgaaatcatcaag
gacttcgtcacagcgctggtggaccgtaccactgttggacgtaacgccaccagaattgga
ttagtcctgtacagtctggatgtccacctggagttcaatctggcgcgctacatgaccaaa
caagatgtcaagcaggccatcaggaagatgtcctacgtgggtgagggaacctatactagc
accgccatccggaaggctacccaggaggctttctacagtgcccgtactggggttaggaaa
gtggccattgttatcacagatggacagacagacaaacgagagcctgtgaagctggacatt
gctgtgagggaggcccatgctgccaacattgagatgtatgcactggggattgtcaacacc
tcagatacaacccaggccgagttcctgcgtgaactaaatctgatcgcctctgaccctgac
agtgaacatatgtacctcatcgacgatttcaacactctaccagctctggagtcaaagctt
gttagccagttctgtgaggatgagaatggagcccttgtgttgaatcgcaacactaatggc
tttggaagaaatgggaacaacggctatgggaacaacggctatgggaacaacggctatggg
aacaacggacatgggaataacggacatgggaataacggacatgggaataacggacatggg
aataacggacaggggaatagcggacaggggaataatggacaggggaataacggacagggg
aataacggacaggggaatagtggacaggggaatggaaacacctctaatgaggatcctatc
ctaaatccaagtggacgcaccagttcccagagtcacatcagaggccgtggagataacttt
gatctgcccctcaatgctggaccactcccagtgcaggtccaagtggatgatgaagagggt
gaagatttagacgtaaggacccactcgcgaggaggtagtactgtggctgtagctaacaaa
acagtatccatcttccctgcaaaggaaagctcccactccaacacagctgtctcgtcatca
ggatcagcatcatcatcctcaggaacaacaggttcagcttcatcatccagcgagggccaa
tttcagcctgtatcaattcctatccctaattctattttcccccaagagtccgtctcgctc
aatccccgctgtaacctgagtttggaccaaggcacctgtcgagagtataacatccagtgg
tattacgacaaacaggccaattcctgtgcacagttctggtatggaagctgtgaaggaaat
gccaaccgctttgagacagaggatgcatgtaagaagacctgtgttctatctagaacagcg
ggttaa
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