Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380209
Help
Entry
139380209 CDS
T10872
Name
(RefSeq) collagen alpha-3(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139380209
04518 Integrin signaling
139380209
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139380209
09142 Cell motility
04820 Cytoskeleton in muscle cells
139380209
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139380209
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139380209
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139380209
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139380209
Hyaluronan
Extracellular matrix or blood plasma proteins
139380209
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
fn3
Motif
Other DBs
NCBI-GeneID:
139380209
NCBI-ProteinID:
XP_070978794
LinkDB
All DBs
Position
22:4902698..5003574
Genome browser
AA seq
3168 aa
AA seq
DB search
MGQENFEHVRQFLYSVVKALHEGGGGRFQFALVQYSGSPKTEFQLNTYPSPLGALAHIRA
MAYRGGGTRTGLGLDFLIRAHLNAAAGSRAGEGVAQAVVILTDGRSQDDVAEPAQVLRLA
GVSMFAVGVQDAVDWELREMASVPQDIHIFSVDSFQALKGIIQDLVVGLCGAVTQAGGSP
MAVEAKEVPRDVTAQESADLVLLIDGSENVGAANFPRVRDLAMKVIEGLDVGRDTIRVAV
ALYSADLEIQFFLNSYDTKAAVLDAVKALQFTGGDEANLGAALENVAGSLLSPASGGRAE
EGVPQALVVISAGPSNDDFSAGDRALKAASIITFGVVVGGEATAELETIATDKSFVLSAP
DFRAVASMGDQLLPYVNAVAQRTIVIQNEFTEAFEVGKRDIIFLVDSTMGATLINSLREF
IKRFVDTMPIGPDQVQVGVTQFSNTARDEIELNAYGSKEDLSAALGRLKPRPGQVVNIGA
ALDFVRTNTLRADKGSRIKQGVPQLVLLLTSKKSSDSVGQAAEALQRMGVLTLAAGSKTA
DEQELKQIAFDESLVFMLKDFRALIRNPRLIVSPLSTLSGTVVIEGPTEPVVEITTVQTQ
RVVRDIVFMVDGSSYIGGANFPYVRDFIAGVVNQLDVRPDRVRIGLMQFAENPKIEFYLN
THNTKQDVLASLGELRLMGGSALNTGAAMDYALTNMFQASTGSRKRQGVQQVLLLITGGP
SQDEVKRIADKVAVAGVLTFTVSAGQADEDYLKTVAFVPNLAYHESRFADLPSVVEQIMT
PLTTVVGDTDITETEITEEPAVVGGERDVAFLIDGSDNVRADFPYIRDFIIKVIEPLDIG
QDRVRISVVQHSERPAPNFYLNTYKDKAEVLRAVNDLRLSGGRSLNTGMALKFMKDTILS
PVHGSRAAQNVPQFLIVLTGGKSKDSVKESAGALKTDGVVPFGVGVKDADPKQIEAISHN
PSFAFNVKEFSQLSTVQQKLNSYVSLSKEKLKVVLEEAESQGPKKDIVFLVDGSDGVGRE
FPIIQEFISSIVKNLNVGENKIRIGVVQYGDSPNADIYLNSHTTKEGVMNAVKGLRQRGG
RERNLGQAVEFVSSEVLNVRRGGRKEEGVPQFLIVVSGGRSTDDIRRPATSLKKSGVLPF
SIGTRDVNSQELQVVSYVPNFAYTVDDLPGLYTVQDKLISTLTEMSDDDIARLRPVFPTP
DDIVPTGGEKRDVVFLIDGTTAVRSEFPAIRDMIGRVVEKLDVGLDRVRVSVVQYSDDAK
MEFLLNEHSTKDEVRQATRKIQSRGGNRLNTGRALDWVSKNIYQRSAGSRIEEGVPQFLI
LVTGGKSNDDVSGPANQLKTNLVAPLAIGAKNANPSELRQISLKPEFAYSINNFGQLPTV
EQQLIASVNTMTTTDISSSFVPPVLDIANLNMGRKDIIFLIDGSDTTGSSGIAHIRDFIL
NIVQQLDVQPDQVRVAVVQYSDKVKTDFSLNSHNNKPAVLSAIKRLRQQGGRSSDLAKAI
EYVIRNELKSSAGVRLAEASQHLVVLTGGRSPTDVSVYGPLLKGSRVNCIGIGAGGADSR
QLNQIATSSADVLQVPTFPGLPTIKERFIARLNGTIPEEAPTETDLPTSGLPKAKAADIV
FLVDGSINLGKDNFKEVMEFILNLVDLFFTERDNLQIGLAHYATDVTDVFYLNTYKTKDD
IISALSRTEYKGGRRINTGAAIRHVQENHFIKDKGSRKDEGIPQILMIVTGGKSSDDGKT
AALGLKATGVRIYAVGVGDIEDELNNLASEASTVARASTFMELSELNEQILETLDDEVKG
IKLCTGVSQEPSKACSLEVLVGFDVSSQNIFQAQRILESKMGAILQRITKMTGISCSSGQ
IPSIQVGILAMDSASEPVHLEFTDNADMLFEAFRALRNRGPYVLNTKTISAYGSRFKSRA
ADAVKVVIHLTDGLDGQYNEMKRGVEELKISGVNSFILVGLERVPRFEEAVLLEFGRGFR
YTRPLRVNVMDLDYELLEELDNIAERECCAVPCKCTGTRGDRGAVGLGGSKGSPGGAGGA
GHPGDEGGPGDRGPPGVNGTQGFQGCPGQRGIKGGRGYSGEKGEYGEIGLDGINGEEGKS
GVAGPPGDRGHPGRRGPKGTKGHAGDIGDTGIRGDPGTTGQDNNVAGPKGDPGDVGPVGE
PGEDGKKGGPGEPGRTGSDGRRGPPGQAGNPGKPGGDGVQGEPGIGGSRGQAGPIGAPGT
RGEDGNPGPRGPGGAQGTPGDKGRRGALGRKGEPGEPGPKGIVGPLGPRGEPGEDGRDGF
GIAGPKGRKGDEGFPGFPGPKGAAGDGGNNGGPGPIGNRGQRGVSGEIGTPGQKGEVGYP
GPYGQKGPRGPGVVQCDLVKKIRDNCPCCYGQQECPLYPTELAFALDASDGVGRPAFNNM
RDAVLRLVGNITISESNCPRGARVALTLYNNEVTTEIRFADALKRRSLVQRVEGLQALQT
RKQRSLETAMNFLAQNTFKRVRSGFLMRKVAIFFVNGPVKDQRAVSAAALRLYDSGIASV
FLVNKEDGQLTRALKMNNTGSALGQVIVLPNPGSAQYNSAIQKVMSCHICLDSCAPDQMC
DYVPPQQSRDRRSSTTDVDIDMAFVMDSSETTYPTVFTEIKRYVAHIVEQLEVSSDPMAS
IHHARVAVIQQAPYEFLRNSSGSPIRVDVGLTDHRSAQDIRNFLLDKTPQLEGGRALAAA
IEHTVEQVFERAPHQRDLKVLTLFVTGPVEEDEERLVAVATDAKCKGYFLVILGVGEKLS
AGDARVMMRMASEPSDVFFKRLTSTSHFYDKHIQNFGRLLPKYLSIENAFYMSPEVSKNC
HWYQSDQPFPKFPFPKSHHSQEKHQKHHENHQAVHPRKHKDQEELHVANTTSSGLTLRWA
SPDPKLIAYFEVVVTRLRDHTLVLRRNVTGTELTVGGLESAQTYHAVVTTRTAQGHVAAT
HKGIITTKAAAEHNIAAPMEVTGIIATTPLDKPEIANELTDPCSLDFDPGLACKNHQAKW
FFDRKNGICTQFWYGGCEGNGNRFETEAQCLKRCMRSEPQQQVEQLQTEILSAPAALTGV
EICQLPKEEGACAKFVLKWHYDALGKSCTRFWYGGCGGNQNRFETQEECEKTCGKAALPR
GQKAWDWLDESRANPERHSQRRVRMKGKRRKGSLGAPVNQGVIAAIRT
NT seq
9507 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagagaactttgagcacgtccgacagtttctgtacagcgtggttaaagcactg
cacgagggtggcggtggaagatttcagttcgccctcgtccagtacagcggctcgcccaaa
actgagttccaattgaacacatacccatctccgctgggggccctggcccatatccgggcc
atggcgtaccgggggggtggcacccggacgggtctgggcttggactttctcatccgggcc
cacctgaacgcagcggctggtagccgcgctggtgagggtgtggcccaggcggtggtgatc
ctgacagacgggcgctcccaggatgacgtggctgagccggcgcaggtgctgcggctagca
ggggtgagcatgtttgcggtgggggtgcaggacgccgtggactgggagctcagggagatg
gctagtgtgccacaggacatacacatattcagcgtagactctttccaggccctgaagggt
attatccaggacttagtggtgggcttgtgcggtgcagtcactcaggccgggggctccccg
atggctgtcgaagccaaagaagtgcctcgagacgtgacagcacaagagtcagctgacctt
gtactcttaattgacggatctgagaacgttggagcggccaacttcccccgcgtgcgcgat
ttggctatgaaagtcattgagggcctcgatgtgggcagggacacaattcgggtggctgtg
gctctgtacagcgcggacctagagattcagttctttctaaatagctatgacaccaaagcc
gctgtcctggacgctgtgaaggcccttcagttcacaggcggcgatgaggctaaccttgga
gccgccttggagaatgtcgctgggagcctgttgagtccagcatcagggggcagggcagag
gagggggtgccccaagctctggtggtgatcagtgccgggccgtccaatgacgatttcagt
gcgggtgacagggctcttaaggcagcaagcattatcacgtttggcgtggtggtcggtggc
gaggctacagccgagctggagactatcgcaacagacaagagctttgttctgtcggccccc
gatttcagggcagtggcaagcatgggtgaccagttgctcccatatgttaatgcagtggcc
cagcgcaccattgtcattcagaatgaattcacagaagccttcgaagtgggaaaaagggat
atcatttttctcgttgacagcactatgggtgccacattgatcaactctcttcgtgagttt
atcaaaaggtttgttgacaccatgccgatcggaccggatcaagtgcaagtgggtgtgacc
cagttcagcaacactgccagggatgagattgagctgaacgcatatggatccaaggaagac
ctgagtgcagccctgggcagactcaagccaagaccaggacaagtggtgaacatcggggcg
gccctggactttgtgaggaccaatacactgagggctgacaaggggagtcgtattaagcag
ggcgtgccccagctggttctgttgttgaccagtaagaagtccagcgacagtgtggggcag
gctgctgaggcactgcagcgcatgggggttctgaccctggctgccggctctaagacggcc
gatgagcaggagctgaagcagattgcctttgatgagagcttggtgttcatgctgaaggac
ttccgcgcattgatccgcaaccccaggttgattgtctctcccctctccactctatcgggg
actgtggtgattgagggaccgacagagccagtggttgaaattacaacagtgcagacccag
cgagtagtcagagacatcgtctttatggtggatggctctagctacattgggggtgccaac
tttccgtacgtgcgggatttcattgccggtgtggtaaaccagctggacgtgcggcccgac
agggtgcgcatcggtctcatgcaattcgcagagaacccaaagattgaattctatctgaac
acgcacaacacaaagcaagatgtgctggctagcctgggtgagctcaggctaatgggaggg
tctgctttgaacacgggagcggcaatggattacgcacttaccaacatgttccaggcctcg
actgggtcacgtaagaggcaaggtgtccaacaggtgcttctcctgatcactggaggccca
tcccaggatgaggttaaaaggatagcagacaaagtggccgtggcgggtgtactgaccttc
acagtcagtgctggccaggcagatgaggactacttgaagacggtcgcttttgttccaaac
ttggcttaccatgaaagcagatttgctgacctgccaagtgttgttgaacagatcatgact
cctttgactactgtggttggagatacagacatcacagaaacagaaataaccgaggaacct
gcagtcgttggaggcgagagggatgttgcattcctgattgacggctctgataatgtccga
gcagatttcccctacatccgggactttatcatcaaagtcattgagcctcttgatattgga
caagatagagtgcggatttcagttgtccagcatagtgagaggccagctcccaatttctac
ctgaatacatataaggataaggctgaagttttaagggctgttaatgatctaagactgtct
ggtggacggagtctgaacaccggaatggctttgaaattcatgaaggacaccatcctgtcc
ccagttcatggtagtcgggcggctcaaaatgtaccccagtttttgattgttttgaccgga
ggcaagtctaaggatagcgtgaaggagtctgctggtgctttaaagaccgatggagtggta
ccgtttggcgttggtgtcaaggatgcagaccctaagcaaatcgaggctatttctcacaac
ccatcctttgctttcaacgtgaaggaattcagccagctcagtacggtccaacaaaagctc
aatagctatgtgagcctttccaaggaaaagctgaaggtcgtcttggaggaagctgagtct
cagggtcccaagaaggatatcgtcttccttgttgatggctcagatggcgtcggaagggag
ttccccatcatccaggagttcatcagctcaatcgtgaagaacctcaacgtgggcgagaac
aagatcaggattggtgtggtgcagtatggcgactcccccaatgcagatatctacctaaac
tcccacacaaccaaggagggtgttatgaatgctgtcaagggactgaggcagcgaggcggc
cgggaacgtaacctgggtcaggcagtggagtttgtcagcagtgaagtgctgaatgttcga
cgtggcggcaggaaggaggagggtgtcccacagttcctgattgtcgtttctggtggaagg
tccacagatgatatccgtcgacctgcgacctcactgaagaagtcaggcgttttgcccttc
agcatcgggaccagagatgtaaactctcaggagcttcaggttgtttcctatgttcccaac
tttgcatacactgtggatgacctccctggcctgtacacagtccaggacaaactgatctcc
acgctcacagagatgtccgatgacgacattgccaggctacgccctgttttcccaactccg
gatgacatagtacccactggcggagaaaagagggatgtggttttcctcattgacggcaca
acagctgtgcgcagcgagttccccgccatccgtgacatgatcgggagggtcgtggaaaag
ctggacgtgggtctggatcgggtgagggtgtcagtggtgcagtacagcgacgatgccaaa
atggagttcctcttgaacgagcactccaccaaagacgaggtccgccaagccacgaggaag
attcagagcaggggtggaaaccgtctaaacactggccgtgccctcgattgggtctccaag
aacatctatcagagatcagccggtagccgcatcgaggagggtgtgcctcagttcctcatt
ctagtcacggggggaaagtccaacgacgacgtctctggaccagccaaccagctgaagacc
aacctggttgcccctcttgccattggggcaaagaatgccaaccccagcgaactgaggcag
atctccctgaagccagagtttgcctactccattaacaactttgggcagcttccaacagtg
gagcagcagcttattgcttcagtcaacaccatgaccaccactgacatctccagtagtttt
gttcctcctgttttggatattgctaacctcaacatggggaggaaggacatcatcttcctc
atagacggctcggacaccacagggtccagtggcatcgcccacatccgtgacttcatccta
aacatcgttcagcagctggatgtgcaacctgaccaggttcgtgtcgctgtcgtccaatac
tctgacaaggtcaagacggatttctctctcaattcccacaacaacaagccagctgtgctc
tctgccatcaaaagactacgccagcagggtggcagatcgtccgatctagccaaagccatc
gagtatgtgatcaggaatgagctgaaatcctcagcgggtgtccgacttgcggaggcctcc
cagcatctagtggtcctcaccggcggaaggtcccccactgacgtgtctgtgtatggccct
ctgctcaaaggctctcgggtcaactgcattggcattggggctggcggagcagactccagg
cagctcaaccagattgccaccagctctgccgatgttcttcaggtacctactttccccggc
ttgcctaccattaaggagaggttcattgccaggctcaatgggacaatccccgaggaggcc
cctacagaaactgatctcccaacttcaggactcccgaaagccaaggctgctgacatcgtg
ttcttggtggatggctccatcaaccttggcaaggacaacttcaaggaagtgatggagttt
atcctgaaccttgtagacctcttcttcaccgagcgtgacaaccttcagattggcctggcc
cactatgccaccgacgtcaccgacgtcttctacctcaacacctacaagaccaaggatgac
atcatcagcgcccttagtcgcacagagtacaagggtggccgcaggatcaacacgggtgct
gccattcgccacgtgcaggagaaccacttcatcaaagataaaggcagcaggaaggatgag
ggcatcccccagatcctgatgatcgtcactggcggaaagtcatccgacgatggcaagact
gccgctctgggtttgaaggccaccggtgtccgtatctacgccgttggcgtgggcgacatt
gaggacgagttgaacaacctggcaagcgaggcctccacggtggccagggcgagcacgttc
atggagctctctgagctcaacgagcagatcttggaaacattggacgacgaggtgaaggga
atcaagctgtgcactggcgtgagccaggaaccctcaaaagcctgcagtctggaggtgttg
gtgggctttgacgtgtcctcgcagaacatcttccaggcccagaggatcctggagtccaag
atgggtgccatcctccagaggatcaccaagatgacgggcatcagttgctcatcgggacag
atcccctcgatccaggtgggcatcctggccatggatagcgcctcggaacctgtccacctg
gagttcacggacaacgccgacatgctgtttgaggcattccgggccctgcgcaatcgcggc
ccctatgtcctcaataccaagaccatttccgcatacggttcgaggttcaaaagccgagcc
gcagacgcagtcaaggttgtgatccatctgactgacggtctggatggccagtataacgaa
atgaagagaggagttgaagaacttaagatttcaggtgtgaacagcttcatcctggtgggt
ctggagcgggtacccaggtttgaggaggctgtgctgctggagtttggccgaggcttcagg
tacaccagacctctccgagtcaatgtcatggacctggactacgagcttctggaggaactg
gacaacattgctgagagggagtgctgtgcagtgccatgtaaatgcaccggcacaagggga
gaccgaggagcagtcgggcttggaggatccaagggcagcccaggtggagcaggcggagca
ggacatcccggagatgaggggggacccggagacagaggtcctcctggtgtcaatggaacg
caaggtttccagggctgtcctggacagaggggcatcaagggtggtcgtggatactctgga
gaaaagggggaatatggagagatcggcctggatggcataaacggagaagagggcaagagt
ggagtcgctggacccccaggagacagagggcaccctgggagaaggggacccaaaggaact
aaaggacatgcaggagacatcggggatacaggaatcagaggagatcctggaaccacaggt
caagataacaatgtggctggacctaaaggagacccaggcgatgtcggcccagtgggagag
ccaggggaggatggtaagaagggaggccccggtgaaccaggcaggacgggttctgatggt
agaagaggcccacctggacaagctggaaaccctggcaaacccggaggcgatggtgtgcag
ggagagcctggtattggaggatccagaggccaagctggaccaatcggtgcacctggaacc
agaggtgaggacgggaaccctggaccaaggggtccaggaggagcccagggaacccccgga
gacaagggcaggagaggagcgctgggtcgtaagggtgagccaggagagcccggaccaaaa
ggcatcgtgggacctctgggacctcgtggtgagcctggcgaagatggtcgagatggattt
ggtatcgcagggcccaaaggaagaaagggtgatgagggcttcccaggattcccaggacca
aagggggcggcaggtgatggaggaaacaatggtggaccaggacccataggaaaccgtggc
cagaggggtgtttcaggtgaaatcggcactccgggtcaaaagggagaggttggatacccc
gggccttatggccagaaaggaccgagaggacctggcgttgtgcaatgtgaccttgtgaag
aaaatcagagacaactgtccttgctgctatggtcaacaggagtgccctctctaccccact
gagctagccttcgccctggacgcctcagacggcgtgggtcggcccgccttcaacaacatg
cgtgacgccgtgctccgcctggtcggcaacatcaccatctccgagagcaattgcccacgc
ggtgcccgcgtggctctcaccctctacaacaacgaggtgaccaccgagatccgctttgcc
gatgcgctgaagcggcgctccctggtgcagcgcgtggaaggattgcaggcattacagacg
cgcaaacagcgcagcctggagacggccatgaacttcctggcgcagaacaccttcaagagg
gtgcgcagcggcttcctcatgaggaaggtggccatattctttgtcaacgggccagtgaag
gatcagcgggcagtcagcgccgcggccctccgtctctatgactccggcatcgcctcggtg
tttctggtcaacaaagaggatggccagcttaccagagccctgaagatgaacaacactggg
tcagcactgggtcaggtgatcgtactgcctaatcccggaagtgcacagtacaactcggct
atccaaaaggtcatgagctgccacatctgcctggactcctgtgctccagaccaaatgtgt
gactacgtcccccctcaacagtcgagagacaggaggtcctccaccaccgacgtggacatt
gacatggccttcgtcatggacagctccgagaccacctaccccactgtcttcaccgagatt
aaacgctatgttgctcacattgtagagcaacttgaagtctcgtcagaccctatggcatcc
atccaccacgcccgtgtggctgtgatccagcaggcaccctacgagtttctgcgcaacagc
agcggctctccgatccgcgtggacgtgggtctgaccgaccaccgctcggcccaagacatc
cgcaacttcctcctggacaaaacgccccaactggagggtgggcgggcgctggcggcagcc
atcgagcacacggtggagcaggtgtttgaaagggcgccccaccagcgtgacctcaaggtg
ctgacattgttcgtgacaggtccagtggaggaggatgaggagcggctggttgccgtggcc
accgatgccaagtgcaagggctatttcttggtcatcctgggcgttggcgagaaacttagt
gctggggacgcccgcgtgatgatgcgcatggccagtgagccctccgacgtcttcttcaag
agactgaccagcacctcacacttctacgacaagcacattcagaactttggccgactgctg
cccaagtatctcagcattgagaacgctttctacatgtcccctgaagtctccaaaaactgt
cattggtaccagagtgaccagccattccccaagttccccttccccaaatcacaccacagc
caagagaaacatcaaaaacaccacgaaaatcaccaggcagtccatccaagaaagcacaaa
gaccaagaggagttgcacgtagccaacacaacttccagtggcctgaccctgcgctgggcc
agcccggaccccaagctcatagcctacttcgaggtggtggtgacacgcctgcgcgaccac
acactggtgctgaggaggaatgtgacaggcacggagctcactgtaggcggcctggagagc
gcccagacctaccacgccgtggtgaccacacgcaccgcccagggccacgttgcggccaca
cacaaaggcattattaccaccaaagcagcagcagagcataatatcgctgctcccatggag
gtgactggtatcatagccactacaccactggacaaaccagagattgctaacgagctcaca
gacccatgctctctagactttgaccctggattggcgtgcaaaaaccatcaggctaagtgg
ttctttgacagaaagaatgggatctgtacccagttctggtatggtggttgtgaaggcaat
ggcaataggttcgagactgaagcccagtgcttgaaacgctgcatgaggtcagaacctcag
caacaagtggaacaacttcagactgagatcctttcagctcccgcggccttgacaggagtg
gaaatctgtcagctccccaaagaggaaggcgcatgcgcaaagtttgttctcaagtggcac
tacgatgcactcggcaagagctgcacacgcttctggtacggaggctgtggcggcaaccag
aatcgcttcgaaactcaagaggagtgtgagaagacctgtggaaaagcagctctgcctcga
gggcaaaaggcatgggattggttggatgaaagccgcgcaaaccccgagcggcactcacag
cgacgagtgagaatgaaaggaaagagaagaaaaggctcgctaggtgcacctgtcaaccaa
ggagtcattgccgcaatacgaacatag
DBGET
integrated database retrieval system
