Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380283
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Entry
139380283 CDS
T10872
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1-like isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04622
RIG-I-like receptor signaling pathway
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
139380283
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139380283
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139380283
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139380283
Pattern recognition receptors [BR:
ocla04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
139380283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
ResIII
Helicase_C
CARD
SWI2_SNF2
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139380283
NCBI-ProteinID:
XP_070978949
LinkDB
All DBs
Position
22:8731148..8749215
Genome browser
AA seq
1002 aa
AA seq
DB search
MAADKDNTANISLIEDFRPRLRKLIEIEFVLDHLNFLDNDNKDLIRTKARKESNLKAVDL
LIDTIIRIRPLPKGWFREFVDALSAGGCKHAATYVEDSPPCPALEAENDNCVRLIELLSP
SLLGMKTTDVCWDCFSKGILTTEDREIILAECQNRGNMGGARELLRRIVRFPPGWFSTFL
KALQDTEHNDLCKELTGESPGDNLIDEPGVLMAVNEAPGNVDPMVEEGPVEAAGKYFLPE
QETLDSSVTSMHLDEPSEADSEIADLYSGTEEPMENGKPENSLDLSMSGCIAPAAESPPK
AVIVLRDYQMDVARPALEGKNIIICLPTGSGKTRVAVYITKEHLDSRRKEGRPGKVVVLV
NKVPLVEQHYSTEFWKFLKNKYKVERVSGDSQLKISFTDIVQKNDIVICTAQLLENYLER
AHSGDDDGIKLSDLSLIVIDECHHTQKGGVYNHIMIRYLKQKHKNAKLKKEQKDTVAIPQ
ILGLTASPGVGGAKKIEKAEEHILRICANLDAYKIMTGNLGENKKEPHKKIATAEERKED
PFGDVLKGVMNAIHIHAELNPTCDLGTQNYEQWVVQKEQNAAKEENQKVRVCAEHLRQYN
EALYLGKTIRMWDAFSFLDKYFDEELKKKVAPEDEEAIIKTDTERFLFTLFKDSKVKLQE
LAKLPQYENNSLAKLRTKILHEFTSREKARGIIFTKTRRSAIALAQWVQENSKFEEVGVK
ACHVIGGGGQSVVKPMTAAEQRDVLNKFQNAEINLLIATTVAEEGLDIAACNFVIRYELV
TNEIAMIQARGRGRAEDSSYTLVAGEGSGVAERESVNEYREKMMSKAIDKVKKLDQEEYE
KRIKEFQIQAIMEERVRTTKKKQKGMKKESPSKVKFSCRSCNKPVCSGEDVEIIENMHRV
NVTPQFKELFIQRENTSLVKRLLDYETNGFIACKDCGQRWGSMMLYRGIECPCLHVKNFL
VTYDEKRKNVNKWSELGIQLPAFDYAEHARSVAESSEDEDSM
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgacaaagataacaccgccaacatcagtctgattgaggacttcagacctagg
ctgcggaaactcattgaaatcgagtttgtactggatcacctgaacttcttagacaatgac
aacaaggacttgatccgaactaaggcgagaaaagagagcaatctaaaggcagtggatcta
cttattgatacaatcatcaggatccggccacttccgaaaggttggttcagggagtttgtg
gatgcactgtcagctgggggttgtaaacatgctgccacctacgtggaggatagccctcca
tgtcctgctctggaggcagagaatgacaactgcgtcagactaattgaacttctgtcgcca
agtcttttggggatgaagactactgatgtttgctgggactgtttttctaaaggtattctc
accacagaggaccgtgaaattattttagctgaatgtcaaaaccgaggaaatatgggtggg
gctcgtgaactgctcaggagaatcgtgagattcccgcccggatggttctccaccttcttg
aaggccttacaggacactgaacacaatgacctgtgtaaagaattgacaggggagtcacct
ggtgataacttgatagatgagccaggtgtcctgatggctgtgaatgaagctccagggaat
gtggatcccatggtggaggagggtcctgtagaagcagcggggaaatattttctcccagag
caggagacattggatagcagtgtgaccagcatgcatctggatgaaccttcagaggctgac
tcagaaattgcagacctatatagtggcacagaagaaccaatggaaaatgggaaaccggaa
aatagcttggatctctcaatgtcaggctgcattgcccctgctgctgaaagccccccaaaa
gctgtcattgttcttcgagattatcagatggacgtggccaggcccgccttggagggaaaa
aacatcatcatatgcctcccgacaggaagtggtaaaaccagagttgctgtctatattacc
aaagaacatctggacagcaggaggaaagagggccgaccagggaaagtggtcgtcttggtt
aacaaggtgcccctggtcgagcagcattactccacagagttctggaagttccttaaaaac
aaatacaaagttgagagggtcagtggggactcccagctcaaaatctccttcacagacatt
gtccagaaaaacgatattgtcatctgtacagcccagcttctggaaaactacttggaaagg
gctcacagtggagatgacgatgggattaaactttcagatttgtcactgattgtgatcgat
gagtgccaccacacacagaagggaggagtctataaccacatcatgatccgctacctcaag
cagaagcacaagaacgccaagttaaagaaagagcagaaggatacagtggccatcccacag
atcctaggcttgaccgcctcacctggcgtcgggggagccaagaaaattgaaaaagcagaa
gagcacattctacgaatctgcgcaaacttggacgcatacaaaataatgacggggaacctt
ggggaaaacaaaaaagaaccgcacaaaaaaattgccactgccgaagagagaaaagaggat
ccctttggcgatgttctcaaaggagtcatgaatgccattcacatccatgctgaactgaac
cctacctgtgacctaggcacccagaactatgagcagtgggtggtccagaaagaacaaaat
gctgcaaaagaggagaatcaaaaagtgcgagtttgtgctgagcatctacggcagtacaac
gaggccctgtacctaggcaaaaccatccgcatgtgggatgccttcagcttcctggacaaa
tactttgacgaggagctgaagaagaaagtggccccagaggacgaggaggccatcattaag
actgatacagagcgattccttttcacactctttaaagatagcaaagtgaaactgcaggag
ttggctaagcttccccagtatgaaaataatagcctagctaagctgagaaccaaaatcctg
catgagtttacatctagagaaaaggctagagggatcattttcacgaaaacccgtcgcagt
gccatcgcattagctcaatgggttcaggagaactccaagttcgaggaggtcggagtaaaa
gcttgccatgtgattggaggaggaggccagagtgtcgtgaaaccaatgaccgctgcagaa
caaagggatgttttgaacaagtttcagaatgcggagatcaacttgctgattgcaacaaca
gtggctgaagagggtctggacatagcagcatgtaactttgtgattcgatatgagcttgtg
accaatgagatcgctatgattcaggcccgaggcagaggcagagctgaggacagtagttat
accttagtggcaggggagggttctggggtcgccgaacgagagagtgtcaacgagtaccgt
gagaagatgatgagcaaagctatcgataaagtcaagaaattagatcaagaggaatatgaa
aagaggattaaagaattccagattcaggcgatcatggaggaaagagtgcgaacaaccaag
aagaagcagaaaggaatgaaaaaggagagcccgtccaaagtgaagttcagttgtagaagc
tgcaacaaaccagtctgctctggggaagatgttgaaatcattgaaaatatgcacagagtc
aacgtaacaccccaatttaaggaacttttcattcaaagagaaaacacctcacttgttaag
aggctactggactacgagaccaatggtttcatagcatgcaaagactgtggacagaggtgg
ggttcaatgatgctctaccgtggaatcgagtgtccctgtcttcacgtcaagaacttcctg
gtgacgtatgatgaaaagaggaagaacgtcaacaagtggagcgagctgggtatccagtta
cctgcctttgactatgctgaacacgctcgatctgtggccgaaagctcagaggatgaagac
tcaatgtaa
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