Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380356
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Entry
139380356 CDS
T10872
Name
(RefSeq) tumor necrosis factor receptor superfamily member EDAR
KO
K05162
tumor necrosis factor receptor superfamily member EDAR
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
139380356
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
ocla04050
]
139380356
Cytokine receptors [BR:
ocla04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
139380356
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Ortholog
Paralog
GFIT
Motif
Pfam:
Death_EDAR
TNFR_c6
SCIMP
Motif
Other DBs
NCBI-GeneID:
139380356
NCBI-ProteinID:
XP_070979073
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All DBs
Position
22:complement(30370826..30418325)
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AA seq
485 aa
AA seq
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MLQKGSQKESLFLCLLLVSCPPFLRSEYSSCGEFEFYNQTLSSCQPCPPCQPGQEPHMNC
GYGIKDEDFVCVSCPPGKYSKGKYEICRRHKDCEGLYRATVLKPGTPDNDADCGPCLPGY
YIQENRPRNLYGMVCHSCQNAPRNTKECMLTKVVLSGKAPSVSTSSTTMFPHPHKDPTGQ
GHLATALIIAMSTIFIMAIAIVLIIMFYILKAKPSGQACCSGQVVKAVEAQTNKQEDKKD
VPDNVVIFSEKDEFDKLKPTPPKTVKSENDASSENEQLLSRSMDSDEEAALERQGAADPN
PSLCLLNLGTKPDLCLLSLGLLNKEKTGSNPTSPINANNISNSNANIINNNNKATGIQSR
RKKILDLYARACNVAEGLSPTELPFDCLEKASRMLSSSYSSEAAVVKTWRHLAESFGLKR
DEIGGMSDGLQLFERISTAGYSIPDLLTRLVQIERLDAVESLCSDVLGGGDTHTVPLSSP
RCASV
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgttacagaaaggaagtcagaaagagtctctcttcctctgtttgttattggtgtcctgt
cctccctttctcaggtcagagtacagtagttgtggagagtttgagttctacaaccagacc
ctcagtagctgccagccctgcccaccatgccaacctggacaggagccccacatgaactgt
ggctatgggattaaggatgaggactttgtgtgtgtgtcgtgtccgccggggaagtactca
aaggggaagtatgagatctgcaggagacataaggactgtgaaggtctgtaccgtgctaca
gtactcaaacctgggacaccagacaatgatgcagactgtggaccctgcttacctgggtat
tacatccaggagaaccggcccaggaacctgtatgggatggtctgtcactcgtgtcaaaat
gcaccgcgcaacactaaagagtgcatgcttaccaaagttgtgctgtcaggcaaagccccc
agtgtctcaaccagcagtaccaccatgttccctcaccctcacaaagaccccacaggacag
ggtcacctagcaactgctctcatcatcgccatgtcaaccatcttcatcatggccatcgcc
attgtcctcatcatcatgttctacatcctcaaagccaagcccagcggacaggcatgctgc
tctggtcaggtggtgaaggctgtggaggctcagaccaacaaacaggaggataagaaagat
gttccagacaatgttgtaattttctccgaaaaggatgaatttgacaaactcaaacctacg
cctccgaagacggtgaaaagtgagaatgatgcatcatcagagaacgagcagctgttgagt
cgtagtatggatagtgatgaggaggcagcattggagaggcagggggcagctgatcctaac
cccagcctctgtctcctgaacctgggaaccaagccggacctctgcctgctttccctgggg
ctcctcaacaaggaaaagactggatccaaccccaccagccctatcaacgctaacaacatt
agcaatagcaatgcaaacatcatcaataacaacaacaaggctacagggattcagagccgg
aggaaaaagatcctggatctgtatgctagagcctgcaatgtggccgagggtctaagtcct
acagaactaccatttgactgtctggagaaggccagtcggatgctgagctcctcctacagt
agcgaggcagccgtggtgaagacctggagacacctggcagagagttttggcctgaagagg
gatgagatcggggggatgagtgacggcctgcagctgtttgagaggatcagtacagccgga
tacagcatcccagacctgctcaccagactggtgcagatagagagactggatgctgtggag
tcactatgttctgatgtactgggaggaggagatacacacactgtccctctgtcctcacca
cggtgtgcaagcgtctga
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