Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380385
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Entry
139380385 CDS
T10872
Name
(RefSeq) germinal-center associated nuclear protein isoform X1
KO
K24317
germinal-center associated nuclear protein [EC:
2.3.1.48
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139380385
03036 Chromosome and associated proteins [BR:
ocla03036
]
139380385
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
139380385
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX-2 complex
139380385
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
139380385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MCM3AP_GANP
SAC3_GANP
CID_GANP
RRM_1
NupH_GANP
RRM_occluded
Nup35_RRM_2
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
139380385
NCBI-ProteinID:
XP_070979118
LinkDB
All DBs
Position
22:complement(11748214..11771938)
Genome browser
AA seq
2175 aa
AA seq
DB search
MNPNSLFGRQQGGAFQAPSNTNKTGGMFQAFRQEGSTNPPQNVAFRQTATFGQPSAFSQP
SVFGQSPAFGQTPSLGQDSVFGQSGGLGQASGQTSTFSSISQPPSFGQSSLGQGSSGFSG
APPPSYGQATGQIQSSGFGQMPAFGQSAAFGQPPAYGQQQAPAFGLSSGISQASSVPTTT
TTAGSAQPLSFGQSPFGQPPPSATTTSFATAQSVVQSGGFSTSEFSFKPSNEVLFKPIFS
ASPEPANPQPASASEQPFGGTTTTQPSFSTKDSSGPASSGFSLLTGAKSGPLGFSFSQPA
VAPSISASIATTSLAQKDPLSIGSGRSLQFTFSQPSALSSTNSSSSTAAPQPAPVPSSPS
SFSFSTKVLQSQPAPPMSLFGGVGFGQTSTFGDLKTEAQAEEKVGDEESTREVTVLGRLG
KGTKRKEEPVSPKAASRKPAQSEDAQAEARADLPRHPSKRPLLRSSRGPVGGLFSRAMSG
IMKSTANSVRRDPVKEEQQPPGWGEGERADTQAPISLRPATPPSAQAPTREVLEKAEATG
SVEAPDPDAETKTPARRRQRSESTDSLGGMSPNDATILQCKSIPLSLNKKNVIEKHFGRF
GKVCRVYCRPHKNLAIVHFQDHASAAKAKKKGKMLHRQEIVIFWQRKKHSPGKKGDRAPE
GEEEERDRDNQVSDTSLGGFQSSSPLRKPLPRAPALSSTVNLSRSSPVKKPSIAKSLQFE
SEPQQDSSSEGQSSERPVPSSLLHLIGQLAETAEEKYRFLEQRDKILRAGRPKRTDLELS
FFVGTCPDMCPEKERYMRETRNQLSCFEVVPDTERVDHVAAIKEYSRSSADQEEPLPYEL
RPLPVLSMTMDYLVTQIMDQGHDNYRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEKC
TRFHVHCAHHLCQEHMMTFDAKINNENMTKCLQSLKEMYQDLSTRGVYCPQEAEFRQYNV
LLKLDVGDVLREVQQFRDEVRNSPEVKFAVQAFAALNSNNFVRFFKLVKSASYLAGCLLH
RYFNQVRGKALRTLNNAHTAGLQRSTIFPLEDLVRMLMFEDAAEATDFIQQFGLNVSGDL
VELSRTAWQEPDLNLPQVKSDVIMAKRAVLIGEVVNGGPLPNPPQHAPVCSFDAHNKYWG
EGPLAEPTLFRSSPVAVTVPAFTLQKPEVKAQPEVELQPQNKPVMLLAEPRLFGDLPPPY
PGLATATEPAQPLQGTDETGEPEPAQPTVQVHPAADLQQQLFQPIDVAQTQPVRPPSPPP
KPEPIYSDEDILAELECVVEEVLEAVVQEVASAGADYAAAALSASSVHMEAVVSEVVEQM
LWEVSTAEVQAERERLAEEKRRIEEARRKQEHEVFLAQFSDSLCSEISQEVLTECIQETA
ASEIQLAMEEEAACVARCSEEVCSFLVEETLDKEIFLMVEDILEAELQRIQKYIKRWRDV
VAVRRQLKRQMRGFPAAPCCVDPRYKLKALAPSAPSQPSMDCLARGMVNLGNAGYMALSS
TRLLKMRQEAIHQMRVHFYYQQLLNESVWTPLDMPMLVVENVPNPPDRIFWKATLLLPSD
HESVASIADRILTDWLETKFGVGESANDTEKEQEGTLRTLCITNGLREAGEKTHKVHISI
KASRGPLSEEGLSNLEEGQELQGTGALLMLLPAPSPGSEDQDVPMLSALLQLKQLQQANI
WDCSLPLAILVPGPHNTQKLEEDLMLQTLVEDGLISEHVFVHIPETTSDLQGSEQVSQAV
RWLLARAPVPALLSSQTLVHFVEAGLGREFSARLYSHRQDRAGAGLARQHPAPVIKLYNA
VLAFLADLVSSQYLSSLSWPPGEFALPETRDLVPHLGWNSPQHLAWLRTAVVSLQIPSWD
IPANTASWPQLCSAIFQYAGQIPTSRHSQPLLMSRLENLLERVRCSTAGAQDHWEEEGPS
FQQVPWDEVVALCIDHKLKDWQPPDSPVCDDAVTEDGEVLVYFPKEGLKGFQPPAEWTEA
VSLTHREKQQETQGDSPGGLAVLSPFFRASPGGLAALPPLRQKLFRSLVDRPDRFAPCHT
LDITHTPSLRDLLPHKVLHGLQEERAHSQRCEEQLQRWLEVEPLDSLSMPLFMPSSLLSM
TNIMAPIRTSGGASTATQEAESEDPLEKAERDWLKGAPVSMAQRLKELDRLLLASREEEL
ACGLKLNSLLNIVED
NT seq
6528 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccaatagtctgtttgggagacagcagggaggagctttccaggcccccagcaac
actaacaagactggtggcatgttccaggccttcagacaggagggttccaccaaccctcca
cagaatgtagcatttaggcaaactgcaacattcgggcaaccgtctgccttcagtcagcct
tcagtctttggtcagtctccggcatttgggcagacgccttcgcttggacaagactctgtt
tttgggcaaagtggaggactaggtcaggcgtcagggcagacctcgacattctcttcaata
agtcagcctccatcctttggtcagtcctcattggggcagggtagctctgggtttagtggt
gctcccccgccatcgtatggtcaggccaccggacagattcagagttctgggtttggacag
atgcctgcttttggacagagcgctgcctttgggcagccacctgcatacgggcagcagcag
gccccggcattcggcctctcctctgggatctcccaagcttcctctgtccccaccactacc
accaccgcagggtcggcacagcctttgagttttggccagtcgccctttggccagccgcca
cccagcgctacgaccacctcttttgctacagctcagagcgttgtacagagtggaggcttc
agcacgtcagaattcagcttcaagccgtccaacgaggtgctgtttaagcccatcttcagt
gccagcccagagccggctaacccccagcccgcctctgcatccgagcagcccttcggtggc
accaccaccacccagccctctttcagcaccaaggacagcagtggaccagccagctcaggc
ttctctctcctgaccggagccaagagtggcccgcttggcttcagcttctcccagccggcg
gtggccccctccatctccgcttccattgccactaccagcctggcccagaaagaccctctc
agcataggctccggaaggagcctgcagttcacattctcccagccatccgctctctccagc
actaactccagctccagcaccgctgccccccaaccagctccggtccccagcagcccctcc
tccttcagcttctctaccaaagtcctccagtcccagcccgcgcccccaatgtccctgttt
ggaggagtcggcttcggccagacttctacattcggagacctcaaaaccgaggcccaagcc
gaggagaaagttggcgatgaggagagcaccagggaagtgaccgtgttggggagacttgga
aaaggaactaagcggaaggaggagccagtgagtcccaaagccgcttcaaggaagcctgcc
caatcagaggacgcccaagctgaagccagagctgacttacccagacacccctccaaacgg
cctctcctgaggtcctcccgcggccccgtgggtggactcttctccagggcaatgagtggc
attatgaaatccacagccaactcagtgaggagggaccccgtgaaggaggagcagcagcct
ccaggatggggggagggggagagagcagacacacaagctcccatcagtctcagacccgct
actcctcccagtgctcaggcccccaccagagaggttctggagaaagcagaggcgactggt
tcggtggaagcccccgacccagacgctgagaccaagaccccagctaggagaaggcagcgc
agcgagagcacggacagcctggggggcatgtcccccaacgacgccaccatcctccagtgc
aagagcattccactcagcctcaacaaaaagaacgtcatagaaaagcactttggccgcttc
gggaaagtctgccgggtctactgccgaccccataagaacctggctatcgtccacttccaa
gaccacgcatcagcagcaaaggcaaagaagaagggtaaaatgctgcacagacaggaaatt
gttatcttctggcagaggaagaaacacagcccggggaagaaaggcgatcgagccccagag
ggagaggaggaagaaagggacagggacaaccaggtttcagacaccagtctggggggcttc
cagtcctcctctccactgaggaagccactccccagagcccctgccctcagcagcactgtc
aacctcagcaggagctccccagtgaagaagccgtccatagccaagtccctgcagtttgaa
agcgagccccagcaggacagcagctccgagggccagagctctgagcgccctgtgccctcc
tccctcctccacctgattggccagctggctgagacagccgaggagaagtaccgcttcctg
gagcagagggacaagatcttgcgagctgggcggcccaaacggacagacctggagctgtct
ttctttgtggggacatgcccagacatgtgccccgagaaggagcgctacatgagggagaca
cgcaaccagctcagttgctttgaggtcgtcccagacactgagagggtggaccacgtggcg
gccatcaaggagtacagcaggtcgtcggcggaccaggaggagcccctcccctacgagctg
cggcccctccccgtgctcagcatgaccatggactacctcgtcacccagatcatggaccag
ggccacgacaactaccgcgactggtacgactttgtgtggaacaggacccgcggcatccgt
aaggacatcacccagcagcacctgtgcgacccgctgacggtgtcgctgatcgagaagtgc
acccgcttccatgtgcactgtgcccaccacctgtgccaggagcacatgatgacgttcgac
gccaagatcaacaacgagaacatgaccaagtgcctgcagagcctgaaggagatgtaccag
gacctgtccaccaggggtgtctactgcccccaggaggctgagtttcgccagtacaacgtg
cttctcaaactagacgttggggacgtcctccgtgaggtgcagcagttcagggatgaggtg
cgcaactctccagaggtgaaatttgccgtgcaggcattcgcagctctcaacagcaacaac
ttcgtacgcttcttcaagctggtgaagtctgcctcctacctggcgggctgcctattgcac
agatacttcaaccaggtgaggggcaaggccctgaggaccctgaataacgcccacacagcg
ggccttcagaggtccaccatcttccccctggaggatctggtgcgcatgctcatgttcgaa
gacgccgctgaggccacagacttcatccagcaattcggcctcaacgttagtggcgacttg
gtggaactgagccgcacggcctggcaggagccagacctgaacctaccccaagtgaagtca
gatgtcatcatggccaagagggctgtgctaattggggaggtggtaaacggaggaccactg
cccaacccgccccaacatgcccccgtctgcagcttcgacgcccacaacaagtactggggg
gagggtccgctggcagaacccacactcttcaggagcagcccggtggctgtaacggtgcca
gccttcaccctgcagaagccagaagtcaaggcccagccggaggttgagctccagccgcag
aacaaacctgtcatgctgctggcagagccacgactcttcggggatcttccaccaccgtac
cccggccttgccactgccaccgagcctgcccagccattgcagggcacagatgagacaggg
gaaccagagcccgcccagcccactgtccaggtccaccctgcagcagatctccaacagcag
ctgttccagcccattgatgttgcccagacccagcctgtcagacccccctcgcccccgccc
aaacctgagccaatctactctgacgaggacatcctggcagaactggagtgcgtggtagag
gaggtgctggaggcggtggtgcaggaggttgccagcgctggggccgactacgctgcagcc
gctcttagtgcgagcagtgtccacatggaggcggtggtgagcgaggtggtggagcagatg
ctttgggaggtgtccacagccgaggtccaagcagagcgagagagactcgccgaggaaaaa
cgcaggatagaggaagccaggagaaagcaggagcacgaagtcttcctggcccagtttagt
gactctctctgttctgagatcagccaagaggtcttgaccgagtgtatccaggagactgcc
gcctccgagatccagttagccatggaggaggaggcagcatgtgtggcgcgctgttctgag
gaggtgtgcagcttcctggtggaggagaccctggataaagagatattcctcatggtggaa
gacatcctggaggcggagctacagcgcatacagaagtacattaagaggtggcgcgacgtg
gtggcggtacgcaggcagctaaagagacagatgcggggcttccctgccgccccctgctgt
gtggacccccgctacaagctcaaagccctggctcccagtgccccctcccagccctctatg
gactgtctggccaggggcatggtcaacctgggcaatgccggctacatggccctgtccagc
accaggttgctaaagatgagacaagaagcaatccatcagatgcgagtccacttctactac
cagcagctgttgaatgagtcagtgtggactcctctagacatgcctatgctggtggttgag
aacgttcctaacccacctgacagaatcttctggaaggccaccctgttgttgcccagcgac
cacgagagtgttgccagcattgccgacaggatcctgacagactggctggagacgaagttt
ggcgtaggtgaaagtgcaaacgacaccgagaaggagcaggaggggacactgaggactctc
tgcatcaccaacggactcagggaagcaggagagaagactcacaaagtacacatcagcatc
aaggcatctcggggcccgctgagtgaagagggcctgtccaatttggaggagggacaggag
ctccagggtacaggggccctgctgatgctgctgcctgcccccagcccaggcagcgaggac
caggacgtgcccatgctctccgctctgctccagctcaaacagctccagcaggccaacatc
tgggactgctcgctgccccttgccatattggtgcctggcccccacaacacacagaaactg
gaggaagacctgatgctccagacgttagttgaagacggtctgatatcagaacacgtgttc
gtccacatcccagagaccaccagcgacctacagggctcagagcaggtgagccaagcggta
cgctggctcttggcacgtgccccagtgcccgccctcctctcctcccagaccctggtgcac
ttcgtggaggccgggctaggccgcgagttcagtgcccgtctctacagccaccggcaggac
cgggcgggggcagggctggcgcgccaacacccagcccctgtcattaagctctacaatgct
gtgctggcattcctggctgacctagtgtcttcccagtacctctccagcctgtcctggcct
ccgggggagttcgccctgcctgagacccgggacttggtgccacacctgggttggaactct
ccccaacacctggcctggctccggacggctgtagtcagcttgcagatacccagctgggac
attcccgctaacacagcctcctggccccagctgtgttccgccatcttccagtacgccggc
cagatcccaacttcgcgccacagccagcccctcctaatgtcccgtctggagaacctcctg
gagagggtgcgctgttccacggctggagcccaggaccactgggaggaggagggcccatcc
ttccagcaggtcccctgggacgaggtggtggctctctgcatagaccataagctgaaggac
tggcaaccccctgacagcccagtttgtgacgatgcagtgacagaagatggagaggtcctg
gtctacttccccaaggagggactgaaaggcttccagcccccggcagagtggacggaggcg
gtcagcctcacacacagagagaagcagcaggagacacagggagacagtccaggaggcctc
gcagttctctctcccttcttcagagccagtccaggaggcctcgcagctctccctcccctc
agacagaagctattccggagcctggtggatcgtccggaccgctttgccccctgccacact
ctggacatcacacacaccccctcactccgggacctgctgccccacaaggtcctccacggt
ctccaggaggagagggcacacagccagaggtgtgaggagcagctgcagcgctggctagag
gtagagcccttggactctctctccatgcccctcttcatgccctctagcctgctctccatg
actaacatcatggcccccatacgtacttctggtggtgcgtccactgctacacaggaggca
gaatcagaagaccctttggagaaagcagagcgcgattggctcaagggtgctcctgtatcc
atggcgcagcgcctgaaggaattggataggcttttattagccagtcgagaggaggagctt
gcgtgcgggctcaagctgaacagcttattgaacattgtcgaggactga
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integrated database retrieval system
