Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380390
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Entry
139380390 CDS
T10872
Name
(RefSeq) thrombospondin-type laminin G domain and EAR repeat-containing protein
KO
K24437
thrombospondin-type laminin G domain and EAR repeat-containing protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ocla03037
]
139380390
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139380390
Cilium and associated proteins [BR:
ocla03037
]
Other cilia and associated proteins
Stereociliary proteins
139380390
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
139380390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EPTP
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
139380390
NCBI-ProteinID:
XP_070979128
LinkDB
All DBs
Position
22:complement(51414289..51451770)
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AA seq
671 aa
AA seq
DB search
MSVLLLLACMSLLCSGTGGGQAAGGWRPCTDLLPLDFLSRVLPPGGEPPLPEVHMVQSRG
ARGLQLAGSQEALSFPASQLFTNCDHFPSEFSFVVTLKIPRLANKRNEYIFSLVEEESDR
LLIGLLVSQERLHFLFQGPTGKKRITFRAVRLADNHWHTVVVAVTGRYATLRVDCGMALE
LVYEKPFPSDLCTAHSRFYIGSRRRWKGLFSGLLRQLVLLPGSDATSRVCPSSDPRLAVL
AVPQALLTMPITPTGNDIVPLYPYETEVFITPGTQPPCAKAEEGQLWFNTLKKGLFLCDG
RLWMPLLQEKERLDYVEDYQDLYTNSETFDIEVFHIPSQGLFAATANRETKPGSGIYKWV
DGKFQVYQNIITYEARAWKYFTVGNKMFLAVANSKGQPGGEWEESVIYKWSSRKLMFLPY
QTIETHSALDWEAFSIQEQHFLAVANHRRGDNNHNIDSVIYRWNPGTKVFEVNQTLETSG
AYDWEFFSVGPYHFLVVANTFDGISTNINSTIYIWLGGMFQPFQYIKTVGATDWEMFQVK
DRYFLAVANGQKLNERGPSHYNINSTIYELNVITQTFVKFQDIVTNSAVDWEFFSVGEEK
FLVVANSHDGSSYSLNSVIYRWQGYEGFVPIHRLPTIGCTDWEYFNTTAGSFLVYSSATS
PLSKVFRLKTY
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtactgctgctgctggcctgtatgtctctcctctgctctgggacaggtggggga
caggcagctggaggatggagaccatgcacagatctgttacctttggacttcctgtcacgg
gtcttaccacctggcggggagccccccctgcctgaagtgcacatggtccagtccaggggg
gcccggggcctgcagctagccggctctcaggaggccctcagcttccccgcttcgcagctc
ttcaccaactgtgaccactttccttctgagttctccttcgtggtcacgctcaagatccca
cgccttgccaacaagaggaacgagtacatcttctcgttggtggaggaggagtcagaccgg
ctgctgattggtctacttgtctctcaggagaggctccactttttgttccagggcccgaca
ggcaagaaacggatcacgttcagggcggtgcggctggcggacaaccactggcacacagtg
gtggtggccgtcaccgggcgctatgctacactcagagtggactgcggtatggccctggag
ctggtctatgagaagcctttccccagtgatctctgtactgcccactccaggttctacatc
ggcagcaggaggcggtggaaaggactgttctctggtctgctgcgacagctggttctgttg
cctgggtcagatgctacctcccgagtgtgtccctcttcagaccccagactggcagtcctc
gctgtccctcaggccctgctcaccatgcccatcacacccactgggaacgacatagtcccc
ctgtatccttacgagacagaagtgttcataaccccggggacccagcctccctgtgccaag
gcagaggagggccagctgtggtttaacacactgaagaaaggcctgttcctgtgtgatgga
cggctgtggatgcctctgctgcaagagaaagagcgtctggactatgttgaagactaccaa
gacctttacaccaactcagagacgttcgacatcgaggtgttccacatcccctcccaagga
ctgttcgctgccacagccaatcgcgagaccaagccgggctctggaatctacaagtgggtg
gatgggaagtttcaagtgtatcagaacatcatcacctatgaagcacgggcatggaagtac
ttcactgtgggcaacaagatgttcctagcagtggctaactccaagggccagcccggcggg
gagtgggaggagtcagtgatctacaagtggagcagcaggaagttaatgtttctaccttat
cagaccatagagacacacagtgctctggactgggaggccttcagcatacaggaacaacat
ttcctggctgtggccaatcacagacgaggtgacaacaatcacaacatcgacagcgtgatt
taccggtggaacccagggaccaaggtgtttgaggtgaatcagaccctcgagacttctggg
gcctacgactgggagttcttttccgtgggcccataccacttcctggtggtggccaacact
ttcgatggaatatccaccaacatcaactccaccatatacatctggctgggaggaatgttc
cagccatttcaatacatcaagacggtgggagcgacggactgggagatgttccaggtcaag
gatcggtacttcctggcggtggctaacggccagaaactgaacgagagaggccctagtcac
tacaacatcaactcaaccatctacgaactgaacgtgatcacacagaccttcgttaagttc
caggacatcgtcacaaacagtgcggtggactgggaattcttctcggtgggtgaagagaag
ttccttgttgtggccaattctcacgatggatcctcgtattctttaaacagtgttatttac
aggtggcagggatatgagggatttgtccctatccaccggctcccaaccatcggctgtacg
gactgggaatatttcaacaccacagcagggtcctttctcgtctattctagtgccacctct
cccctgtctaaagtcttcagactgaagacatactga
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