Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380500
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Entry
139380500 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1 isoform X1
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139380500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139380500
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139380500
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139380500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
PRY
zf-RING_2
Ig_DSCAM-DSCAML_C
zf-C3HC4_3
Pur_ac_phosph_N
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
139380500
NCBI-ProteinID:
XP_070979305
LinkDB
All DBs
Position
22:complement(17550832..17617794)
Genome browser
AA seq
691 aa
AA seq
DB search
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCTPNEPVQSISAFQCPTCR
YVITLSQRGLEGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAALDSTAMTSPSERVQ
CQFCEQDPPQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPMPDCHLRGLMCLEH
EDEKVNMYCVTDEQLICALCKLVGRHRDHQVAALSDRYEKLKRTPDCYLSERSEQEETDQ
VIYTQALDSNLSNLIKRNNELETLMGKLIQTCQHVECNASRQENKLLEECDLLIDIIQQR
RQMIATKIKEGKAIRLRKLAQQIASCKQIIERSSSLITQADHTLKETDHARFLQTAKSIC
ERVSMATASSQILIPEINLNDTFDTFALDFTREKKMLESLDYLTAPNPPIIRAELCTASN
DTITVHWTSDDEFCVVSYELQYAIFTGQANVVSLCNSADSWMIVPNIKQNHYTVHGLQCG
TKYMFIVKAINQAGSRSSEPWKLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETLSKKS
HTQDRFTSQGSYGITGNVYIDSGRHYWEALIGGSTWFAVGVAYKSAPKHEWIGKNSASWV
LSRCNNSWVVRHNSKEMPIEPSPHLRRVGVLLDYDAGSLAFYDGAGSQHLYTFDIAFAQP
VCPVFNVWNKCLTVLTGLPIPDHLEGTDCRD
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggaaacactagagtcggagctgacctgcccaatctgtctggagctcttcgaggaccca
ctgctcttgccctgcgctcacagcctgtgtttcaactgtgcccaccgcatcctagtctcc
cactgcacccccaacgagcctgtgcagtccatcagcgccttccagtgcccaacctgtcgc
tatgtcatcaccctcagccagaggggcctagaaggactgaagcgtaacgtcactctgcaa
aacatcattgaccgctttcagaaggcttccgtgagcgggcccaactcccccagtgagact
cgccgcgagcgggccgccctagacagcacggccatgacctcccccagcgagagggtgcag
tgtcagttctgtgagcaggaccctccccaagacgccgtcaagacctgtgtcacctgtgag
gtgtcctactgcgacgaatgcctgaaggccacccaccccaataagaagcccttcactggc
caccgtctgatcgagcccatgccggactgccacctcaggggactcatgtgtctggagcac
gaggacgagaaggtgaacatgtactgtgtcacagatgaacagttgatctgtgccttgtgc
aaactggtcggtcggcatcgggaccaccaagtagcagcactcagcgaccgctacgagaaa
ctgaagagaactccagactgctatctcagtgagaggagcgaacaggaggaaacagaccag
gtgatatatacgcaagccttggactctaacctcagcaatctaatcaagaggaacaatgag
ttggaaactctgatgggcaagttgattcagacttgccaacatgtggagtgcaacgcatca
agacaagagaacaagctccttgaagaatgtgacctcctgatcgacatcatacagcagaga
aggcagatgatagccaccaagataaaggagggcaaggctattcggctgcgaaagctagcc
cagcagatcgccagctgcaagcagatcattgagagatcgtcgtccctcatcactcaggct
gatcacaccctcaaggagacagaccatgcccgcttcctacaaacagccaaaagcatctgt
gaaagagtgtccatggcaacagcctcctctcagatcctgataccagagatcaacctaaat
gacacctttgatacgtttgcgttggacttcacaagggaaaagaaaatgctggaaagcttg
gattacctcacagcaccaaatcccccaataatccgggcggaattatgtacggcatcgaac
gacaccatcactgttcactggacgtctgatgacgagttctgtgtcgtctcctatgagctt
cagtatgccatcttcaccggacaagccaatgttgtcagtttgtgtaactcggctgatagc
tggatgattgtgcccaacatcaagcagaaccactacacagtgcatggactccagtgtggc
accaagtacatgttcatcgtcaaggccatcaatcaggcagggagtcgcagcagtgagcct
tggaaactcaagaccaacagtcaaccattcaagttggacccaaagtctgctcacaagaag
ctgaaggtctcccatgacaacctgacagtggagcgagacgagacgttgtccaagaagagc
cacactcaggaccgcttcaccagccagggcagctacggcatcacagggaatgtgtacatc
gacagcgggcgccactactgggaagccttgataggagggagcacatggtttgctgtgggc
gttgcttacaagtcagcaccgaaacatgagtggatcggcaagaactctgcctcgtgggta
ctgtctcgctgcaacaactcctgggtagtacgtcacaacagcaaggagatgcccatcgaa
ccgtccccccacctgcgtcgtgtgggggtgttgctggactacgatgctggatccctggcc
ttctacgatggcgccggctcacagcacctgtacacgttcgacatcgccttcgctcagcca
gtctgtcccgtgttcaacgtgtggaacaagtgtctgaccgtcctcacagggctgcccatc
ccagaccacctagagggaacagactgccgggattaa
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