Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380557
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Entry
139380557 CDS
T10872
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04622
RIG-I-like receptor signaling pathway
Brite
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139380557
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139380557
mRNA cycle factors
Common to processing body (P body) and stress granule
139380557
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
139380557
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
139380557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139380557
NCBI-ProteinID:
XP_070979412
LinkDB
All DBs
Position
22:complement(20704434..20726867)
Genome browser
AA seq
745 aa
AA seq
DB search
MSHVVVDNQHGLDQQLAGLDLNSDGQGGGTGRRYIPPHLRNKEVSKNENAYSSGRQYGYS
VPPPVNFYSPGGWDSGRSNGFANGYHDNRNTGFGGRGGPPRNDRGGRGSYRGNGMGGASF
NQPMHIAGFSGGQDGGGWGGTPRQDAAYNSFGGRGKSSFYNDRGSSGGRGYQRGGYGGGG
NNRWQEDSRDDEDWSKPSPANERLEAELFSSGNTGINFEKYDDIPVEATGSNCPPHIDSF
HDVDMGEIIMSNIALTHYTRPTPVQKYAIPVIKSKRDLMACAQTGSGKTAAFLVPVLSQI
YTQGPGDAAAAGKNGQDSGKYGRRKQYPLSLVLAPTRELALQIYEESRKFAYRSRVRPCV
VYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEP
QIRRIVEQDTMPPKGIRQTMMFSATFPKEIQMLARDFLEDYIFLAVGRVGSTSENITQKV
VWVEDGDKRSFLLDLLNATVIPSDAPDVQEAAVTPGKESLTLVFVETKKGADALEDFLYR
EGYACTSIHGDRSQRDREEALNQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIE
EYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLGYENQHKGN
TGRGRSKRFSSGGFGARDYRQTPGGGGFGGGGGRGGPRTGGYGGGGSRGGFGGGGFGGGN
SYGGNDAGYGGNYSHSGSGTDWWGN
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgataatcaacacggtctagatcagcagcttgctggcctagac
ttgaactctgacggacagggaggaggcacaggcaggcgttacattccacctcacttgagg
aacaaagaagtttccaaaaacgaaaatgcttattcctctggtagacagtacggttattca
gtgccacctccagtgaacttctactctccaggaggatgggacagcggacgcagcaacggc
tttgccaatggttaccatgacaaccgcaatacgggcttcgggggacgcggcgggcctccc
cgaaatgacagaggtgggcgtggcagctaccgcggtaacggcatgggtggcgcctcgttt
aatcagccaatgcacatcgcagggtttagtggtggacaggatggtggaggctggggaggt
actcccagacaagacgcagcctataacagctttggcgggaggggaaagtcgtctttctac
aacgaccgtggatcatcagggggcagaggttatcagcgtggaggttatggcggtggaggc
aacaaccgctggcaggaagactccagggacgatgaggactggtccaaacccagccctgcc
aacgaacgcttggaagcggagctgttctcaagcggcaacacgggtattaactttgagaaa
tacgacgacattccggtggaggccactggatccaactgcccgccacacattgatagtttc
catgatgtggacatgggggagatcatcatgagcaacattgccctgacccactacacgcgg
cccacccctgtccagaaatacgctatcccggtcatcaagtccaagagagacctcatggct
tgcgctcagactggctcgggtaagactgcagccttcctggtgccagtgctgagccagatc
tacacacaggggcctggagacgctgcagcggctggcaagaacggacaggacagtggtaaa
tatggacgccgtaagcagtatcctctctccctggtcctggctcccaccagagaactggcc
ctgcagatctacgaagagtccagaaagtttgcataccgctcccgtgtgcgtccctgtgtg
gtgtacgggggggctgacatcggccagcagatcagagacctggagcgaggctgccacctt
ctggtggccacacccgggcgcctggtggatatgatggaaaggggcaagattggcctcgac
tactgcaactacctggtgctggacgaggctgacaggatgttggacatgggttttgagccc
cagatcagacgcatcgtggagcaggacaccatgccccctaaaggcatccgtcagaccatg
atgttcagtgctaccttccccaaggagatccagatgctggcgcgggatttcctagaggac
tatatcttcctggccgtgggccgcgtgggctccacctcagaaaacatcacccagaaagta
gtgtgggtggaggatggtgacaagagatccttcctcctggacctgctcaacgctacagtc
attcccagtgatgctcctgatgttcaggaggctgcagtgacacccggtaaggagtctctg
acattggtgtttgtggagaccaaaaagggagcagacgccctggaggacttcctgtatcgt
gagggctacgcctgcaccagtatccacggtgatcgctcccagagagaccgagaagaggcg
ctgaaccagttccgctctggccgctgccccatcctggtggccaccgcggtggctgcgcgg
ggtctggacatctctaacgtcaagcacgtcatcaactttgacctgcccagcgacatagag
gagtatgtccaccgtatcggtcgtacaggccgcgtggggaacctgggtctggccacgtcg
ttcttcaacgataagaacagcaacatcaccaaagacctgctggacatcctggtggaggcc
aagcaggaggtgccgtcctggctggagagcctgggttatgagaaccagcacaagggcaac
acaggacgcggacgctccaagaggttctcctctggtggatttggtgccagggactaccgt
cagacacccggtggtggcggctttggcggtggtggtgggcgcggaggcccacgcaccggg
ggttacggaggaggcggaagccgtggcggctttggtggaggtggctttggaggcgggaac
tcctatggtggcaacgatgcaggctacggtggcaactacagccactccggtagtggaaca
gactggtggggcaactag
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