Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380577
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Entry
139380577 CDS
T10872
Name
(RefSeq) POU domain, class 2, transcription factor 1-like isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139380577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139380577
03021 Transcription machinery [BR:
ocla03021
]
139380577
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
139380577
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
139380577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POU2F1_C
Pou
Homeodomain
DUF3839
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
139380577
NCBI-ProteinID:
XP_070979475
LinkDB
All DBs
Position
22:21223917..21250123
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AA seq
760 aa
AA seq
DB search
MADGGAASQDESSGPDSRMSNPSETSKCAMESQSGDGNTGVQTNGLDFQRQTVQATNAIT
NAHAQALLQQSKSEDSGAIPTSVQQGVLPQAQLMLAGGQIAGLTLSPAQQQMFLQQAQAQ
LLAAAMQQQSASQQSSTTGASISASAATPITQLPLSQPVQITSIPSVSTHLPGQLSQLGY
PYEMATFSSYLPQLQQLQQQNLTMPQFVLVQPGHHIATQLQPGQFIISQTPQGQQSMYTT
QSFLQAHNLLTQLPQSQANLLQTQPSINLASQPATPSHTIAATPIQPLSHSQTPPKRLDT
PSLEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSF
KNMCKLKPLLEKWLNDAENLSSDLALSSPCGLGSPGLGMEGLNRRRKKRTSIETNIRVAL
EKSFLEQNQKPTSEEITIIADQLNMEKEVIRVWFCNRRQKEKRINPPSSGHSITGTGSTP
IKTIFTPNSPLVASTASLVTSNTPTTLTLNPVMPLTSTSVSGLTLTGTTIGATTNTASVI
STAPMVTAVTSSTSLSPSPTALQATAAETDGTQEHTVVMQAPSSLATNLGTGQVMVAGPG
LSAALQGAAQLPTSSSYASMAGLNPGLMASSQFTPGGALLSLAPGGLGGAINPAMLSNST
LATIQGLWSALASGGTLPITSLDGSGNLLFANTSAGSTPNLVQPLFLNPQNLSLLTSNPV
SLVSAGAAGGGALQVTANHQVTTATVPVPASTITTASKAQ
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggaggagcagcgagtcaagatgagagttcaggaccagattctagaatgagt
aatccatcagaaactagtaaatgtgcaatggagagtcagagtggggacggaaacacagga
gtccaaacgaatggactggactttcagaggcagacggtgcaggccacaaatgcaatcacc
aatgcacatgcacaggctctgctccaacagtccaagtctgaagactcgggtgcaattccg
acctccgtccagcagggggtgctgcctcaggcccagctcatgctggctgggggacagata
gctggattgaccctgtctccagcgcagcagcagatgtttttgcagcaggcccaggcccag
ctcttggcagcagccatgcagcagcaatcagccagccagcagagcagcaccacgggggcc
agcatctctgcctccgcagccacccccatcacacagctgcccctgtcccagcccgtccag
atcacctctattccctctgtctctactcatctcccaggccagctaagccagctgggatac
ccgtatgagatggcgaccttcagcagttacctacctcagttacagcagctgcagcagcag
aacctaaccatgccccagtttgtcctggttcaacctggccaccacatcgccacccagctg
cagcctggccagttcatcatctcacagacgccgcagggccagcagagtatgtacacaacg
cagagtttcctgcaagcccataatcttctaactcaactacctcaaagccaagccaacctc
ctgcagactcagccaagcatcaaccttgcctcacagccagcgactccgtcccacactata
gcagccacgcccatccagcccctgtcccacagtcagaccccgcccaaacgcctggacaca
cccagtctggaggagcccagcgacctggaggagctggaacagttcgctaagaccttcaaa
cagagacgcatcaaactgggcttcacacagggggatgttggcctggccatgggcaagctg
tatggtaacgacttcagccagaccaccatttcccgcttcgaggccttgaacctcagcttt
aagaacatgtgcaagctgaagccacttctggagaagtggctcaacgatgcagagaatctg
tcgtctgacctggccctgtccagcccttgcggcctggggtcccccggtctgggcatggag
gggctcaaccgccgacgcaagaagaggaccagcattgagaccaacatccgcgtggcctta
gaaaagagctttctggagcagaaccaaaaacctacctctgaggagatcaccataattgct
gaccagctcaacatggagaaggaggtgatccgggtgtggttctgtaaccgtcggcaaaaa
gagaagcggatcaacccccccagcagcggacacagcatcacagggacaggcagcaccccc
atcaaaaccatcttcacccccaatagccccttggtggccagtacggcgagccttgtgacc
agtaacacaccaaccacactcactttaaacccagtgatgcctctcaccagcaccagcgtc
tccggcctgaccttgacaggcacgacgatcggagcgaccacaaacacggcatctgtcatc
tctacggcacccatggttaccgcggtgaccagctccacctcgctaagcccctcccccaca
gccctccaggccacggcagcggagacggatggaacccaggagcacacggtggtcatgcag
gcgccatcgtcactagcaaccaatctggggacaggtcaggtgatggtggctggaccgggg
ctgtcagcggccctgcaaggagctgcccagttacccaccagttctagttacgcctccatg
gctggccttaacccaggactgatggcatcctcacagttcactcctgggggggccttgctg
agcttagctccgggtgggcttggaggggctataaaccccgccatgttgagcaacagcacc
ctggccaccatccaaggtctatggagcgctctggcatcgggtggcactctccccatcacc
tcgctggacgggagtggtaacctgctgttcgctaacacctcggccggcagcacccccaac
ctggtgcagcccctcttcctgaacccccagaacctgtccctgctcaccagcaaccccgtt
agcctggtgtcggccggagccgccgggggaggggccctgcaggtcacagccaaccaccag
gtcaccacggcaaccgtcccagtgcccgcctccaccatcaccactgcctccaaggcccag
tga
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