Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380657
Help
Entry
139380657 CDS
T10872
Name
(RefSeq) collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139380657
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139380657
09142 Cell motility
04820 Cytoskeleton in muscle cells
139380657
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139380657
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139380657
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139380657
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139380657
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139380657
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139380657
NCBI-ProteinID:
XP_070979660
LinkDB
All DBs
Position
22:complement(24648834..24762629)
Genome browser
AA seq
1683 aa
AA seq
DB search
MKFEVRMSGTMQTRHRIELKSLKFLFLCLSVAILASGVDAGGKKHNGPCGGRDCSGGCKC
FPEKGARGQPGPLGPQGPHGPPGGLGDPGVQGVQGEKGDRGRGGFIGPKGSVGMTGVPGF
SGSDGIPGHPGQAGTRGKPGADGCNGTHGDSGLSGKPGYDGQPGYNGQAGRKGQKGDTLE
LSVYMERFRGDSGQPGYPGFVGPQGYPGRSGYRGLPGPQGPLGFPGLPGPKGTMTKVLKG
VKGEAGEAGQQGPPGNSTHPHTSPLTGPYGRKGEKGLKGETGVEADNKGETGIMGMPGQR
GVPGRDGEQGLRGDLGEPGFRGRDGQKGAIGEPGELIYYEGPSGGPNRVGPPGQLGPQGE
MGLQGEKGLPGRAGPPARKSDSQIQVEYLWGPFGEPGIKGETGPPGEPGIPALSPGPPGI
GGISGLRGPPGPPGSWADFYKGFAGSRGRPGSAGRKGLKGDHGLCECNIVHSPPGLPGPA
GSQGDPGMSGEFGQQGDPGEPGPRGVIGLPGFPGATGQPGPKGRKGELIWAKEKGYAGDP
GDPGATGEPGLQGFPGPSGINGFPGNRGLSGDAPEGLTGEKGYPGRSGLPGLFGQMGEPG
RVLGATKGVRGLQGDDGEPGYAGVEGRAGDPGVSGCSPRGDGRLNDKGDCDAVPGPPGMP
GPPGPQGLVGFPGIPGQNGFTGPLGDDGAKGEIGEQGIGGSPGQPGFTGPRGDLGQPGAK
GKPGDQGLPGQQGRDGESGEKGPHGEIWGASTGQTGEVGLPGEQGPKGFSGEPGNEGYPG
MGGMPGMIGFKGDVGPSGLQGEQGRPGAAGKYGWKGVPGQAGVHGPTGSIGQPGLSGGRG
DQGDPGAPGPIGLKGTPGEFGGLGAEGNTGHLGDPGEPGPTGHSGLPGFKGIKGSRGMSG
FGGMPGESGLKGFSGQKGEDGIPGGFGQKGIMGDYGSKGERGLSGLPGEKPLIPRQIIND
MKGTKGEDGTLGQIGFTGPRGPKGFPGVPGMEGYHGVPGDPSDEKGFPGNPGAQGLPGPK
GMPGPTGSNGISGFPGMSGHRGEKGTPGAYGSLGDPGVKGVKGEEGPIIDMPGSTGLRGE
DGFPGVPGQKGYIGNPGDRGGGGFHGIDGMKGGLGEPGIGGPLGSDGQGGFQGNQGTKGW
PGIPGESGTNGRPGFPGQRGFPGLKGILGLDGLKGEKGIPGLPGQDNLGTPGVPGAKGTR
GETGIPNSEVGTPGSLGLKGVQGQPGDQGQVGLPGFQGPQGPQGTSDKPGPSGDPGFPGP
KGLPGFPGPRGYPGEPSPYGEKGLAGHYGFPGFSGLKGKQGDQGPSGYKGQSGVSGKKGV
KGEQGMMGIPGRFGFQGDRGPSGPKGNTGLIGYPGAPGNQGPAPVPPRMPGERGAPGPQG
IRGPEGVRGETGPKGPPGAPGYLGPQGQKGMPGVGGRPGTPGYRGNDGGRGHLGLQGMEG
HRGNPGTTGLPGMPGRSVSVGYLLVKHSQSEQTPMCPVGMSKLWDGYSLLYFEGQEKAHN
QDLGLAGSCLPRFNTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVEEEEIKPYIS
RCSVCEAPSVAIAVHSQDITIPQCPVGWRSLWIGYSFLMHTAAGDEGGGQSLSSPGSCLE
DFRTTPFIECNGAKGTCHYFANKHSFWLTSIEQSFQAEPASETLKAGQFLSRISRCQVCM
KNL
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgaagttcggatgagcgggacaatgcagacaagacaccggattgaactgaag
agcctgaagtttctgtttctatgtctttctgtggccatcctagcatcaggagttgacgca
ggtggtaagaagcacaatgggccatgtggaggaagagactgcagcggaggatgcaaatgt
ttccctgagaagggcgccaggggccaacctggtcctcttggcccgcagggaccccatggg
cctccagggggcctaggggatccaggagtccaaggagtccaaggagagaagggcgaccgg
ggcagaggaggcttcatcggccccaagggttctgtggggatgactggtgttcctgggttt
tctggatctgacggtattcctggccatccaggacaggcagggactcgtgggaaacctgga
gcagacgggtgcaacggaacacatggagattcagggttgtcagggaaaccaggctacgat
ggccagcccgggtataatggtcaggcaggcagaaagggacagaagggagacactctggag
cttagtgtgtacatggagcggttcaggggagattcaggacagcccggatatcctggattt
gttggtcctcagggttacccaggtcggtcgggctacagaggactcccaggaccacagggc
ccattagggttccctggccttcctggaccaaagggcaccatgaccaaagtgttgaagggg
gtcaaaggagaagcgggtgaggctggacagcaaggtcccccaggaaactccacccatcct
cataccagcccacttaccggaccctatggcagaaagggtgaaaaagggttgaaaggtgaa
actggagttgaggctgacaacaaaggagagactgggattatggggatgcctgggcaaagg
ggtgtccctggtcgggatggagagcaaggactaaggggggaccttggagaaccaggattt
aggggcagagatggccaaaagggtgccatcggagaacctggggagttgatctattatgaa
ggtccctcaggagggcctaacagagttggtccccctggacagctgggaccccagggagag
atgggtttgcagggggagaaaggtctgccaggccgggctggacctcctgctaggaagagt
gatagtcaaatacaagtggagtacctgtggggtccgtttggggaaccggggataaaagga
gagacgggcccacctggagagccaggtatccctgctcttagccccggacccccaggtatc
ggcggaatatctgggttaaggggcccacctggaccaccaggatcatgggcggacttctac
aagggatttgctgggtcgagagggcggccaggctctgcggggagaaaaggactgaaaggt
gatcacgggttgtgtgagtgcaacattgtccactctcctccgggcctgcctggccctgct
ggtagccaaggcgaccctggaatgagtggcgagtttggtcagcagggcgatccaggcgag
ccaggaccccgaggtgtcatcggactgcctgggttccctggtgccacaggacaaccgggt
ccaaagggcaggaagggcgagttaatttgggccaaagagaaaggatatgctggggaccca
ggagacccgggtgcgactggtgaaccaggattgcagggcttccctgggccaagtgggatc
aatggattccctgggaaccgtggtctttcaggggacgcacctgagggactcactggagaa
aaaggttatcctggccggtcgggtctccctgggttgtttggacagatgggagaaccggga
cgggttctaggtgccactaaaggcgtcagagggttacaaggcgatgatggggagccgggt
tacgctggtgtcgaaggtcgagctggagatccaggagtgtctggctgtagtccgagagga
gatggacgactgaatgacaaaggcgattgtgatgccgtacccggaccacccggtatgcca
ggaccaccaggaccccaagggttagtgggtttcccaggcatcccaggtcaaaatggattc
acaggtccacttggagatgacggggccaaaggagagataggagagcaaggcataggaggg
tctcccggacagccaggtttcactggcccccgtggagacttgggtcagcccggcgccaag
ggtaaacctggagatcaaggtctgccaggccaacagggtcgggacggggagtccggggaa
aagggaccacacggagagatctggggagcgtcgaccggacaaactggagaagtgggtctt
cctggagagcagggacctaaaggttttagcggagagcctggaaacgagggctacccaggg
atgggtggcatgcctgggatgattgggttcaagggcgacgtgggtccttcaggtctacag
ggggagcaaggaagaccgggagctgctgggaagtacggctggaaaggtgtacccggacag
gctggagtccatggaccaacaggaagcatcggacaaccaggtttgagcggaggcaggggt
gatcagggcgaccctggcgccccggggccaataggactgaaggggacaccaggggagttt
ggaggtctgggtgctgagggaaacaccggacacctgggtgaccctggagagccaggacct
acaggacactctggcctgccagggttcaaaggtatcaaaggttctcgtggcatgtcaggg
tttggaggtatgcccggtgagtcgggcctgaagggcttctctggacagaagggagaggat
ggcatacctggcggatttggacagaaaggaatcatgggcgactatggttcaaagggtgaa
cgtggtctgagtggcctgccaggcgagaaacccctcatccctcgtcagatcatcaatgac
atgaaggggaccaagggagaagatggaaccctaggacaaatcggatttactggacccaga
ggtccgaaaggttttcccggagttccgggtatggagggctaccatggcgttcccggagac
cccagcgatgagaagggtttcccaggcaacccaggggcgcagggacttccagggccaaaa
ggaatgccaggtccgactggatcaaacggaatcagcggctttcctgggatgtctggtcac
aggggggagaaaggtaccccgggtgcctacggatctttaggagatccaggagtgaagggt
gtcaaaggtgaggagggtcccataatcgacatgcctggatccacaggactgaggggggag
gatggtttcccaggggttccaggtcagaagggttacattgggaatccgggagacaggggc
ggtggtggtttccatggtattgatggcatgaaaggggggctgggagagcctggcatagga
ggacctctaggatctgatggtcaaggagggtttcaaggcaaccagggtacgaagggatgg
cctgggatccccggagaatcaggcacaaatggacggccaggcttcccaggacagagaggt
tttcctggactgaagggtatattgggactggatggactgaagggtgagaagggcatccct
ggacttccaggtcaggataacttgggaaccccaggtgttcctggtgctaagggaacgagg
ggtgagacaggtatacccaactcagaggtcgggaccccaggatcgctgggtttgaagggc
gttcaaggacaaccaggtgaccagggccaggtgggactcccagggtttcagggcccccaa
ggaccacagggcacctcagacaaacctggaccatcaggagaccctggcttccctgggccc
aaagggctgccaggtttccctgggccccgtggatatcctggtgagccctctccatacgga
gagaagggtttagctggccactatggcttccctggattctctggtctgaaaggaaagcag
ggggatcagggaccatcaggctacaaaggacagagtggagtgtctgggaagaaaggtgtg
aagggagagcaagggatgatgggaattcctggtaggtttggtttccaaggagaccgaggt
ccttctggcccaaaaggaaatactggactcataggttacccgggagccccaggtaaccag
ggcccagccccagtcccccccaggatgccaggagaaaggggtgctccagggcctcagggc
atccgaggaccagagggggtacgaggggagactggcccgaaaggaccccctggagctcca
ggctacctgggcccccaggggcagaaggggatgccaggggtgggtggcagaccgggtacc
cctgggtaccgtggaaatgacggagggaggggccaccttggtcttcagggcatggaagga
caccgtggtaacccaggtactacagggttgcctggcatgcctggacgcagtgtgagtgtg
ggatatctgctggtgaagcacagccaatcagagcagacccccatgtgccccgtgggcatg
tccaagctgtgggatggctacagtctactgtacttcgagggccaggagaaggcccacaac
caggacctaggtctggcaggctcctgcctccctcgtttcaacaccatgcccttcctgtac
tgcaatcccggagacgtctgctactatgccagccgcaatgacaagtcctattggctgtcc
accaccgcaccccttcccatgatgcccgtggaagaggaagagatcaaaccctacatcagc
cgctgctctgtgtgcgaggcgccatccgtcgccatcgccgtgcacagccaggacatcacc
atcccacaatgccctgtgggctggcgcagcctgtggattggctactccttccttatgcac
acagcagcaggtgacgagggcggtggtcagtctctgtcgtcccctggttcctgtctggag
gacttccgcaccactcccttcatcgagtgtaacggggccaagggcacctgccattacttc
gccaacaaacacagcttctggctcacctccatcgaacagtccttccaggcagagcctgcc
tccgagaccctgaaagcaggccagttcctctcacgcatcagccgctgtcaggtctgcatg
aagaacctgtga
DBGET
integrated database retrieval system
