Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380658
Help
Entry
139380658 CDS
T10872
Name
(RefSeq) collagen alpha-1(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139380658
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139380658
09142 Cell motility
04820 Cytoskeleton in muscle cells
139380658
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139380658
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139380658
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139380658
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139380658
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139380658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
FeoB_associated
Motif
Other DBs
NCBI-GeneID:
139380658
NCBI-ProteinID:
XP_070979661
LinkDB
All DBs
Position
22:24762635..24817960
Genome browser
AA seq
1644 aa
AA seq
DB search
MMVHSGTLVLLVAVSYTIFRTEAKGCSGSSCGGKCDCSGVKGEKGERGFPGLQGNMGFPG
MQGNEGPAGPMGPKGEYGESGTPGMKGTRGSNGLSGFPGNPGLPGIPGQDGPPGSSGIPG
CNGTKGDRGTDGQPGFPGLQGPPGIPGLMGMKGDPGGVLGIIPLKGDKGFPGTPGLPGPN
GPSGPEGPPGNQGSDGPRGFPGIPGPPGEKGDRLSFQSEKGDKGAQGLRGPPGPPGLPSQ
EAGGNTVTHFLPGPPGQRGETGDRGDKGSCIPHLNGVKGEQGPPGPRGKPGKDGDNGFKG
ERGFPGGPGYHGTPGEKGEKGPPAYVDSAPGSPGPPGLPGLQGERGFPGLQGDLGPPGSL
IEGPPGEKGQPGEIGQKGDRGADGDSLTGKPGQDGSVGPPGPPGPPGDEPCDPALEKGPP
GPPGPPGLQGELGQKGDQGDTCVQCEAFGPPGLPGPQGPKGLQGYPGAAGTKGDTGLPGP
TGPDGSPGNYGTPGLIGAPGAHGEPGDIYVAPGLKGDKGGSGFVGTRGLPGVDGLPGKAG
LPGVPGPKGEPAQDGIKGGRGLDGEPGITGPPGERGPPGVPGVGRQGEPGEKGTSGQGGR
PGIPGQPGVKGEPGKGVSSPGPQGIPGPRGESGIRGLQGDRGPHGDPGIPGFPGQKGDTG
APGIGFSGPPGPKGYSGAPGATGLPGEPGRPGQDGFSGISGTPGPKGEPGRGLPGPKGAQ
GPAGVTGFPGEKGNLGLPGIPGQEGHTGPPGAQGIKGDHGPPGQHGGTGPPGPPGAGEPG
APGPMGPPGESGLFGHDGVKGDKGLPGSPGLDMPGPQGEKGDSGLPGLSGSKGFPGRPGP
AGRDGFPGGAGPKGEMGVMGTPGTPGYQGPSGNPGSPGLRGDPGISGPRGEFGENGPKGE
RGEQGLQGPAGNMTEVDMEHMKGEKGDLGDPGDPGYTGEKGYPGQPGVPGMPGKDGEPGT
PGQPGDKGETGFPGEPGSIGYPGNKGGIGEMGYPGSVGTKGDKGIVGTPGHPGFRGTEGV
KGDKGQTGLPGVGVPGPSGEKGQLGLPGFPGNAGEKGQKGGMGVPGMPGTPGTKGDTGHI
GYQGQPGQPGEKGIGGLPGSPGEPGQTGRPGEPGLQGPPGTTGEKGASGVDGIPGSSGER
GDTGLPGRGFSGTPGSSGDKGDKGSPGFPGSPGIPGIPGTRGDKGIPGFEGSHGQPGERG
LPGPAMEGPKGDQGVSGKPGEPGTSGAPGPAGVPGSVGGKGDKGDQGEPGVHGEQGFKGD
QGYPGLSGQAGLPGVDGLKGEMGLQGVPGFPGTKGEFGVVGFKGELGDRGFPGDKGNDGP
PGPPGPHIFIKGDSGFPGNQGPQGPVGPSGIPGLKGQQGVTGIQGIKGDEGNPGFNGLPG
AKGEPGLFGPSGPRGYPGPPGPDGVPGRVGPPGPSSMEHGFLVTRHSQSVEVPHCPEGTS
VIYDGYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTS
PEPMPMNMAPITGQSIKPFISRCSVCEAPAMVIAVHSQNIMIPSCPNGWDSLWIGYSFVM
HTSAGAEGSGQALASPGSCLEEFRGAPFIECHGRGTCNYYANSYSFWLATIEDEEMFTKP
VPTTQKAGNLRSNISRCQVCMKRT
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgatggtccatagtggtacgctggttctgttggtggctgtatcctacacgatatttcgg
acagaggctaaggggtgttctgggtcatcgtgcggaggaaaatgtgactgcagtggagta
aaaggagaaaagggtgagcgggggtttcctggtctccaaggcaacatggggttcccgggc
atgcagggcaacgaggggcccgccgggccgatgggccctaagggagaatatggcgagtct
ggaactcctggaatgaaaggaacacgtggatctaatggtttgtcaggcttcccaggaaat
ccagggctaccgggtatccccggacaagacggcccccctggatcgtcaggtatcccaggg
tgcaacggaacaaagggagatcgagggacagatggacagcctgggttccctggtctacag
ggtcctcctggtatccctgggctaatgggaatgaaaggagacccaggtggtgttttagga
atcatcccactgaaaggagataaaggattccctggaacacctggtttaccgggacctaat
ggcccctcaggacccgaaggccccccaggaaaccagggatcagacggacccagaggtttc
cctggcatacctggccccccaggagaaaagggtgaccggctgtcattccagagtgagaag
ggagacaagggtgcacaagggctccgtggtccccctggcccccctggactcccgtcacag
gaagcgggaggaaataccgttactcatttcctccctggaccaccgggtcagagaggcgag
acaggagacagaggagacaaaggttcttgcattccccatctaaacggggtcaagggtgaa
caaggcccaccaggaccaaggggaaaacctggcaaagatggcgacaatggatttaaggga
gagagaggctttcctggcggccctggataccatggaacaccgggtgaaaaaggagagaaa
ggacctccagcatatgttgatagtgctcctggctctcccggcccccctggtctcccgggc
ttacaaggagaaagaggtttccctggtcttcaaggagaccttggtccaccaggcagtctt
attgaaggacctcccggagagaagggccaaccaggagagattggtcagaagggagacagg
ggtgcagatggggactctctcacaggaaagcctggacaagatggatccgtcggaccccct
ggtcctcccggacctcctggtgatgagccatgtgatccagcccttgagaagggaccaccc
gggccccccggcccaccaggactacagggggagttgggacagaaaggtgatcagggagac
acgtgtgtgcagtgtgaagccttcgggccccctggactccctggtccacaggggcctaaa
ggactgcaaggatatcctggagcagcaggcactaaaggagacacgggcctgcctggacct
actgggcctgatggaagccccggtaattacggtactcctgggttgatcggggctccagga
gcccatggtgagcctggcgatatctacgtggctccagggctgaagggtgacaaaggaggg
tctggcttcgtgggcacacgaggactgccaggtgtggatggactgccagggaaagctgga
ctaccaggcgtgcccggacccaaaggagaacctgcccaagatggcatcaaggggggccgt
ggtctggatggggaacctgggatcactggacccccaggggagaggggtcctcctggtgta
ccaggggttggccggcagggggagcctggagagaagggtacatctggccaaggaggccga
cctggaatccctggacaaccaggagtgaaaggtgaaccaggaaaaggtgtgagttcacct
ggaccccagggcatccctggacctcgaggagaatctggcatacgtggactacaaggtgac
cgaggacctcatggagacccaggaattccaggattcccaggacagaaaggtgacacaggt
gcacctggcattggattctcaggaccacctggacctaaaggatattctggagctccagga
gccactgggttgccaggagagcctggaagacctggacaggatggtttctctggaatatca
ggcacacctggtccaaagggtgagccaggtaggggtctacctggacctaaaggtgctcag
ggtcctgccggagtgacaggtttccctggagagaaaggcaaccttggtctacctggaatt
cccggacaagagggacacacaggaccacctggagctcagggcatcaaaggtgaccacggc
ccccctggtcagcatggtggcacaggaccccctggaccccctggagcaggagaacctggt
gcccctggacccatgggaccccctggagagtccggcctcttcggtcatgatggtgtgaag
ggtgataagggtttgcctggctctcctggtctggacatgcccggccctcagggagagaag
ggagactcaggattacctggactttctggttccaaagggtttccaggacgaccaggcccc
gccggcagagatggattccctgggggggcaggccccaagggagagatgggagtcatggga
acacctggaacaccaggatatcagggtccttctgggaaccctggaagtccaggactgaga
ggtgaccctggtatctctgggccaaggggggagttcggtgagaatggacccaaaggagag
aggggagagcaaggtctccagggccctgctggcaacatgactgaagttgacatggagcac
atgaagggcgagaaaggagacctcggggatccaggtgaccctggatacacgggagagaag
ggttatccaggacagcctggagtacctggtatgccaggaaaggatggagagcccggtaca
cctggtcagccaggtgataaaggggagacaggttttcctggagagcccggcagtattgga
tatcctggaaataaaggaggcattggcgaaatgggatatccaggttctgtaggtacgaag
ggtgataaaggcattgtgggcacaccgggtcatccagggttcaggggtacagagggggtg
aagggagacaagggacaaaccggtctgccaggtgttggagtaccaggaccctctggagag
aagggtcagttgggtctgcccgggttccctggtaacgcaggagagaagggtcagaaggga
ggaatgggagtgcccgggatgccaggaacaccaggaaccaagggagacactggacacatt
ggttaccaaggtcagccgggtcagccaggagagaagggtattggtgggcttcccgggtca
ccaggagagccaggtcaaacaggtcgaccaggtgagcctggtctgcagggtccaccaggt
acaaccggagagaaaggagcgtcaggagtggacggcatacctggatcatcaggagagaga
ggagacacaggtttacctggcaggggcttctcagggacaccagggtcgtctggggataaa
ggtgacaaaggctctccaggtttcccaggctctccaggtatcccgggtatcccagggacc
aggggagacaagggtattccaggctttgagggttcccatggccagccaggagaacggggt
ctcccaggacccgccatggaggggcccaaaggagaccaaggagtgtcaggaaagcctgga
gaaccaggtaccagtggtgctccaggtcctgctggtgttccaggcagcgtgggggggaag
ggagacaaaggggaccagggtgaaccaggagtacatggggagcagggtttcaaaggagat
caaggataccctggactttctggtcaagctggccttccaggtgttgatggactaaaggga
gagatgggactgcagggagtgcctggtttcccagggacaaagggtgaattcggagtggtt
ggattcaaaggagagctgggggacagaggattcccaggagacaaaggtaatgatggtccc
cctggtcctcctggcccccacatcttcatcaagggagacagcggcttccctggtaatcag
ggccctcaggggcctgtggggccctctggtatccctgggctgaaaggacagcaaggtgtg
acaggtattcagggtattaaaggtgatgaggggaacccagggtttaatggtctccccggc
gccaagggagaaccaggcttgtttggtccctcaggacccagagggtaccctggaccccca
ggacctgatggtgttccgggtcgggtgggtcctcctggcccctcctccatggaacatggt
ttcctggtaaccaggcacagccaatcggtggaggttccacattgtcctgagggaacgtca
gtgatctatgatggatattccctactctacgtccagggcaacgagcgctcccacggccag
gacctgggtacggctggtagctgtctaaggaagttcagtcccatgcccttcctcttctgt
aacatcaacaacgtctgtaactttgcctcccgtaacgactactcctattggctcacctcc
cctgagcccatgccaatgaacatggcccctatcactggccagagcatcaagcccttcatt
agcaggtgttcagtatgtgaggctcctgccatggtgatagcagtgcacagtcagaacatc
atgatcccatcatgccccaatggctgggactcactctggattggctactccttcgtcatg
cacactagtgcaggtgctgagggctctggacaggcactggcatctcctggctcctgtcta
gaggagttccgtggcgctccgttcatcgagtgtcacggccgtggaacctgcaactactac
gccaactcctacagcttctggctggccaccatcgaggacgaggagatgtttacgaaacct
gtgcccaccacacaaaaggcaggaaatctccggagtaacattagccgttgccaggtgtgc
atgaagaggacatag
DBGET
integrated database retrieval system
