Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380659
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Entry
139380659 CDS
T10872
Name
(RefSeq) protein strawberry notch homolog 2-like isoform X1
KO
K26273
protein strawberry notch
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ocla03036
]
139380659
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
139380659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Motif
Other DBs
NCBI-GeneID:
139380659
NCBI-ProteinID:
XP_070979707
LinkDB
All DBs
Position
1:complement(19303067..19408217)
Genome browser
AA seq
1655 aa
AA seq
DB search
MPSLPSPSPAMDGENYLHPEGPQLDSSIFEVASSNMESYLYPSGSWASFSQQSGGYNAHC
PMQSGNQQYHLNAPMPDMDMFSHSGFHDDFLNLPRNGDFPQNLSCIDDLSNSLFSSPADS
LSDYTDAQAFIPTDNLAHVPTIWDINTPAQSQLELNANRFQDLNSLEDIAAIISTPPLGG
YQQTQRNQTPAEEEAEEEEEETEELGHVDTYADYKPSKSTIGISHPDIVVETNTLSSVPP
PDITYTLSIPNSTINCGLLSALQLEAIIYACQQHEVILQNNQRAGFLIGDGAGVGKGRTV
AGIILENYLKGRKKALWFSVSNDLKYDAERDLKDIDAPTIPVHALNKIKYGDTATSEGVL
FATYSALIGESQAGGQHRTRLKQILDWCKPGFDGVIVFDECHKAKNATSTKMGKAVLDLQ
HNLPLARVVYASATGASEPKNMIYMSRLGIWGEGTPFKTFDDFLHAIEKRGVGAMEIVAM
DMKVSGMYIARQLSFSGVSFRIEEIGLDDDFKLVYNKAAKLWAEALAVFMRAADALCLVS
RKSLWGQFWSSHQRFFKYLCIAAKVRCLVELAKKELKAGKCIVIGLQSTGEARTREVLDE
NDGHLDRFVSAAEGVFKALVQKHFPSEKQRREKARGNKRKRKPRGRQPKFPKHTMVHLGG
VINISDDSSTDTDGMDTDSNSSPDSLMDNNDDVIFVQHTSCHTASIEKMKQSLLNKIADL
GKELPLNTLDELIDQFGGPEMVSEMTGRKGRVVRRPDGSVRYESRAEQSHTIDHINLKEK
DRFMCGEKMVAIISEAASSGISLQADKRVKNQRRRVHITLELPWSADRAIQQFGRTHRSN
QVTAPEYIFLISELAGERRFASIVAKRLESLGALTHGDRRATESRDLSKYNFENKYGTKA
LDKITKAILGHIESKVSPPKGYPGGDALFFRDMKHGMMDVGIFCKEPRFGLSTEKDCSIT
KFLNRILGLEVHKQNSLFQYFTDNFDYLIEKDKKEGKYDMGILDLAPGNDEIYEEKQETF
MTVGNPQDGQVVLYKISVDRGMPWEEAYEKVQNLNSPDEGFYLSHKLRGNHPCVLLAEQG
RGRNFIVYKPNIGKQAHPENLDNLQLRYRKVTPDQAKDSWESQFNFSFGKCSHANWNGKC
KKIEEGQECLQGMRLRQYHMLCGALLRVWKYVADVVSDITCSSILQIVRLKTKNSNKQVG
IKIPENCVARVRQELLKMDEEVKRRRKEKEQQRAQEQQRAQEQRLAEERQLHNQHLLAKL
YSQRQTLNHSFNNQNLSQGLKTQRLSLAQANPLQVKPLLQPKPSQLKPQLGPVNQLPSMA
SPTSHFSNFPHHFPSLRLLQPDPSSSMPPRTGEEVLDLTVSPSPSPDSKERGLVLDCLTR
DGFGLDSLILLSELAAQNTAHKLQQPLQPLPPLTKPQQLLSPQQIQLQSPQQIQPQLQSP
QQMHPQLQSPQQIQTQLQSPQQIQLQSPQQIQLQSPQQIQPQLQSPQQIQPQLQLPQQIQ
PQLQSPQQIQPQLQSPQQIQPQLQSPQQIQPQQRLDSPTLINSDHQDYYDILKLLEDPDH
LPYSLSSQTTTNPSTSSNTVAQVSSGLLSSPSTPSSSLFSPSALAPSEQQPLPLANGHCS
TDALINVREVLDNMLRTSADRQTVIHYRLPEWDSV
NT seq
4968 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcctcccatcaccctcaccggccatggacggggagaactacctgcacccagag
gggccacagctggacagcagcattttcgaagttgcctcttccaatatggagagttatctg
tatccctctggttcctgggcatcattttcacagcagtctggaggctacaacgcacactgc
cctatgcaatctggaaaccagcaataccacttgaatgctcccatgcccgatatggacatg
ttcagccattcagggttccatgacgatttcctcaacctccccaggaacggagacttccct
cagaacctgtcctgcatcgatgacctctccaactctctgttctcctctccggccgactcg
ctgtcagactacaccgatgcccaggccttcatccccacagataacctggcccacgtgccc
acgatatgggacataaacacaccagcacagagccagctggagctgaatgccaacaggttt
caggatttgaacagtttggaggatatcgctgccattatcagcaccccacctttgggagga
taccagcagactcagagaaaccagactccggcagaagaggaggcagaggaggaggaggaa
gagacagaggagctgggacatgtagacacctacgctgactacaaaccatccaaatccacc
atagggatctcccacccagacatagtggtggagaccaacacgctgtccagcgtccctcca
cctgacatcacctacactctgtccattcctaactccaccatcaactgtggcctgctctct
gccttgcagctggaggccatcatatacgcatgccagcaacacgaggtaattctgcagaac
aaccagagagcaggcttcctgataggagacggggccggagtagggaaaggccgcacagtg
gccggcatcatcctggagaattacctaaagggaaggaagaaagcgctatggttcagtgta
tccaatgacctgaaatacgacgcagagagagatctgaaagacatagatgctcccaccatt
cctgtgcatgccttaaacaagatcaagtatggagacacagctacctcagaaggagtcctg
tttgcgacatactctgcactgatcggggagagccaagcaggtgggcagcaccgcaccaga
ctcaagcagatcctggactggtgcaagcccggctttgatggagttattgtgtttgacgaa
tgccacaaggccaagaatgctacgtccaccaagatgggcaaggccgtgctggacctgcag
cacaacctgccgctggccagggtggtttacgccagtgccacaggtgcctctgagccaaag
aacatgatctatatgagccgcctggggatctggggcgagggcacgcccttcaagaccttt
gacgacttcctgcacgccatcgagaagaggggtgtaggcgcgatggagattgttgccatg
gacatgaaggtgagtgggatgtacatcgcccggcagctgagcttctcaggggtgtccttc
cgcatcgaggagatcggtctggacgacgacttcaaactggtctacaacaaagctgccaaa
ctgtgggcggaggcgctggccgtgttcatgcgtgcagcggacgcgctgtgtctagtcagc
aggaagtccctgtggggtcagttctggtcttcccaccagcgcttcttcaaatacctctgt
atcgccgccaaggttcgctgcctggtggagctggccaagaaagaactgaaagctggcaag
tgcatcgtgattggtctacagtccacaggagaggcccgaaccagagaggtcctggatgag
aacgatgggcacctggacagattcgtatctgcagcagagggtgtgttcaaagctctggta
cagaaacactttccctctgagaagcagaggagagagaaggcacgtggaaacaagagaaaa
cgtaagcccaggggccggcagcccaaattcccaaagcacaccatggttcatctggggggc
gtgatcaacatcagtgacgacagcagcacggacacggacggcatggacaccgactccaac
tcctcgccagactccctgatggacaataacgatgacgtcatcttcgtccagcacaccagc
tgtcacacagccagtatagagaagatgaagcagagcctcctgaacaagatcgctgacctg
ggaaaggaactacctctgaacactctggacgagctcattgaccagtttggaggaccagag
atggtatcggagatgacgggtcgtaagggtcgcgtggtgcggcgtcctgacggaagtgtg
cgctacgagtcgcgtgcagagcagagccataccatagaccacatcaacctcaaggagaag
gaccgcttcatgtgtggagagaagatggtggccatcatctcagaggcagccagctcaggc
atctccttgcaggcagacaagcgggtgaagaaccagcgtcggagggtccacataacccta
gagctgccctggagtgcagacagagccatccagcagtttggtcgtacccatcgctctaac
caggtgacggctccagagtacatcttcctcatctctgagctggccggtgaaagacgcttc
gcctccattgtggccaagagactggagagcctgggtgcattgacccacggtgacaggaga
gccacagagtccagagacctgagcaaatacaactttgaaaacaagtacggtaccaaggct
ctggataagatcaccaaagccatcctgggccacatcgagagcaaggtgtcccctcccaaa
ggttaccccgggggtgatgctctgttcttcagagacatgaagcatggcatgatggacgtg
ggcatcttctgcaaggagccacggtttggtctcagtactgagaaagactgcagcatcacc
aagttcctcaacaggatcctgggcctggaggtccacaagcagaactctctgttccagtac
ttcactgacaactttgactacctgatcgagaaggacaaaaaggagggcaaatacgacatg
ggaatcctagatctggccccaggtaacgatgaaatctacgaggagaagcaagagaccttc
atgacagtgggaaacccccaggacggacaggtcgtgctctacaagatcagcgtggacaga
ggtatgccctgggaggaggcctatgagaaggtccagaacctcaacagtcctgacgagggc
ttctacctctcacacaagttgcgggggaaccacccgtgtgtgctgctggcggagcagggt
cgagggaggaacttcatcgtctacaagcccaacatcgggaagcaggcccacccagagaac
ctggacaacctgcagctacgctaccgcaaggtgactccagaccaagccaaggacagctgg
gagagccagttcaacttctcctttgggaaatgtagccatgctaactggaacgggaagtgt
aagaagatcgaggagggtcaggagtgtctgcagggaatgcgtctgcgccagtaccacatg
ctgtgtggtgcgctactgcgcgtctggaagtatgtggctgacgtggtctctgacatcacc
tgctccagcatccttcagatcgtacgcctcaaaaccaaaaatagtaacaagcaagtcggt
atcaagatcccagagaactgtgtggcccgagtgcggcaggaacttctcaaaatggacgag
gaggtgaagagaaggcgcaaggagaaggagcagcagcgcgcccaggagcagcagcgcgcc
caggagcagcggctagccgaggagcggcagcttcataaccaacacctgctggccaagctt
tacagccagagacagaccctgaaccacagcttcaacaaccagaacttgtcgcagggcctc
aagacccagcgcctgagcctggcccaggccaatcctctacaggtcaagcctctactccag
cccaaaccttcacagctcaaaccccagctcggtccagtcaaccagctccccagcatggcc
agccccacctcccacttctccaatttcccccaccacttcccctccctgcgcctcctgcag
cccgacccctcctcctccatgccccctcggaccggggaggaggtcttagacctgacagtg
agcccctctccctccccagacagcaaagagagaggcctggtcctcgactgcttgaccaga
gacggctttggcctggactctctgatattgctgagcgagctcgccgcccagaacactgca
cacaaactgcagcaacctctacagccactgccaccactgacaaagccacagcagctactg
tcgccacagcagatacagctacagtcgccacagcagatacaaccacagctacagtcgcca
cagcagatgcatccacagctacagtcgccacagcagatacaaacacagttacagtcgcca
cagcagatacagctacagtcgccacagcagatacagctacagtcgccacagcagatacaa
ccacagctacagtcgccacagcagatacagccacagctacagttgccacagcagatacaa
ccacagctacagtcaccacagcagatacaaccacagctacagtcgccacagcagatacaa
ccacagctgcagtcgccacagcagatacaaccacagcaacggttggacagtccgactcta
atcaacagcgaccaccaggactactatgacatcctcaaactgctggaagatccagaccat
ctgccttactctctgtctagccaaacaactactaacccctccacttcctccaacacagtg
gctcaagtctcgtccggcctcctctcttccccctctactccctcctcctctctcttctct
ccttcggccctggccccctcagaacagcaaccgctccctctggccaacggccactgcagc
acggacgccctcattaatgtgcgcgaagtgctggacaacatgctgcggaccagcgcagac
cggcagacggttatccattaccggctgcctgaatgggactctgtgtaa
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