Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380855
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Entry
139380855 CDS
T10872
Name
(RefSeq) integrin beta-5-like isoform X1
KO
K06588
integrin beta 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04145
Phagosome
ocla04148
Efferocytosis
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139380855
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139380855
04148 Efferocytosis
139380855
09144 Cellular community - eukaryotes
04510 Focal adhesion
139380855
09142 Cell motility
04820 Cytoskeleton in muscle cells
139380855
04810 Regulation of actin cytoskeleton
139380855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139380855
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139380855
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
139380855
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin beta subunits
139380855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
PSI_integrin
EGF_integrin
I-EGF_1
EGF_2
vWA_SIBA-E
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
139380855
NCBI-ProteinID:
XP_070980087
LinkDB
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Position
22:complement(37713668..37800740)
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AA seq
804 aa
AA seq
DB search
MWNPWQLLYRTALGCMILEIFIHNVAQGLNVCMSGSAMSCEECLIIHPSCAWCAQEKFGS
ARTLMSRCDLRQNLQKRGCEAHHMESPSSSTTVVKSEPLSSKGSGPTQYDVIQIMPQKIS
LSLRPGDQTSFKVQVRQVEDYPVDLYYLMDLSLSMKDDLDTIRNLGTKLADEMRKLTSNF
RLGFGSFVDKNMSPFSYTARKYQDNPCNGYKLFPSCVPSFGFRHLLSLTDKVDRFNEEVQ
KQMVSRNRDAPEGGFDAILQAAVCKERIGWRKEAFHLLVFATDDVPHLALDGKLGGLVQP
HDGECHMNEKNEYSGSTNMDYPSLALLGEKLAANNIYLIFAVTKRLYVIYKNFTALIPGT
TVEILDQDSKNIIQLIVNAYNSIRSKVELIVWDQPEDLSLSFTATCQDGQPLPGLRKCAD
LKIGDTVSFNVSIDARGCPAPGTQQGFTIKPVGFKDHLEVSVDYRCACGCTDQTQANSTH
CSSIGQYTCGICRCDPGYLGARCECQEGEAGSMYLSACRQAEGMQICGGRGECSCNQCLC
YESEFGKIYGTFCECDDFSCARHKGILCSGHGECHCGECKCHAGYIGDNCNCSTDTSSCV
SDDGQICSGRGSCACGRCQCTEPGAFGDTCEKCPTCPDACGTKRECIECRLFSSGRLSDN
QTCQRLCKDEIITVETLKTDDPNAVLCLYKTENECVMKFTYSEHANGMSVLTALKEPECG
AAPDAMTVLLAVVGSILLVGIVLLAIWKLVITVHDRREFARFQSARSRARYEMASNPLYK
QPISNDYVETDFSMYSKSYNGAAH
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacccgtggcagttgttgtaccgtacagctcttggctgcatgattctggaaata
tttattcacaatgttgcacaaggtctgaatgtgtgtatgagtggcagcgctatgtcttgt
gaagaatgcctcatcatccatccaagctgtgcctggtgtgcgcaagagaagtttggcagt
gcgaggaccctgatgtcgcggtgtgacctgcgtcagaacctgcagaagaggggctgtgaa
gcccatcatatggagagtcccagtagcagcaccacggtagtgaagagcgaacccctcagc
tccaaaggctctgggcctacccagtatgatgtcatccagatcatgccccagaagatctcc
ctcagtctccgaccaggtgaccagacatcattcaaagtgcaggtgcgtcaagtggaggac
tacccagtggacctgtactacctgatggacctgtctctgtccatgaaggatgacctggac
accatcaggaacctgggcaccaaactggccgatgagatgaggaaactcaccagcaacttc
agactgggcttcggatcctttgtcgacaagaacatgtcccccttctcctacacggcccgc
aagtaccaggacaacccctgcaatggatacaaactgttccccagctgtgtcccctccttc
gggttccgccacctcctctccttgactgacaaagtggatcgcttcaacgaggaagtacag
aaacagatggtgtctcgcaacagggacgctccggagggaggcttcgatgccatcctgcag
gctgccgtctgtaaggagaggataggctggaggaaggaggccttccacctgctggtgttt
gccacagacgatgtacctcacctggccttggacggtaagctgggagggctggtccagccc
catgatggggagtgccacatgaatgagaagaatgagtacagtggctccaccaacatggac
tacccctctctggctctactgggagagaagctggctgcaaacaacatctatctcatcttc
gctgtgacaaaaaggctgtatgtcatttacaagaatttcacagcactgatacctggaacc
acagtggagattctggatcaggactccaagaacatcatacaactcatcgttaacgcctac
aatagcatccggtccaaggtggagctgatcgtgtgggatcaacctgaagacctcagtctg
tccttcactgccacctgtcaggacggacagcctctcccaggcctcaggaagtgtgccgac
ctcaagattggagacacggtgtccttcaacgtgagtatagacgccagaggctgccccgcc
ccaggtacccagcagggtttcaccatcaagcctgtgggcttcaaggatcatctggaggtg
tctgtggactaccgctgtgcctgtggctgcaccgaccagacccaggctaacagtacccac
tgcagctccattggacagtacacctgtggtatctgccgctgtgacccgggctacctgggt
gcccgctgtgagtgccaggagggtgaggctggcagcatgtacctgagcgcctgcaggcag
gctgaggggatgcagatatgtggtgggagaggggagtgcagctgtaaccagtgcctctgc
tatgagtcagagttcgggaagatctacgggaccttctgcgagtgtgacgacttctcctgc
gctcgacacaagggcatcctctgctcgggtcacggagagtgccactgtggagagtgtaag
tgccatgcgggctatatcggggacaactgtaactgttccactgacacctcatcctgtgtg
tctgatgacgggcagatctgcagcgggcggggcagctgtgcctgtgggcgctgccagtgc
actgaaccaggggccttcggggacacctgcgaaaaatgccccacctgccctgatgcctgt
ggcaccaagagggaatgcatcgaatgccggcttttcagctctggaagactgtccgacaac
cagacctgccagcggctatgcaaggatgagatcatcactgtggaaacgcttaaaacagac
gaccccaacgctgtcctctgcctgtacaagacggagaacgaatgtgtgatgaagttcaca
tactctgaacacgccaacggcatgtcagtcctcacagctctcaaagagccagagtgtggc
gcagcgccggacgccatgacggtcctcctggcggtggtgggcagtatcctactggtgggc
atcgtgctgctagccatctggaagctggtcatcaccgtgcacgaccgcagagagttcgcc
cgcttccaaagcgcacgctcccgcgcacgatatgagatggcctccaaccccctgtacaag
cagcccatctccaacgactatgtagaaaccgatttcagtatgtacagcaagtcttacaac
ggagcagcccactga
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