KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139380875
Entry
139380875         CDS       T10872                                 
Name
(RefSeq) splicing factor 3B subunit 1-like isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139380875
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ocla03041]
    139380875
   03036 Chromosome and associated proteins [BR:ocla03036]
    139380875
Spliceosome [BR:ocla03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    139380875
 Complex B
    139380875
 Complex C
   U2 SnRNP specific factors
    139380875
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    139380875
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870
Other DBs
NCBI-GeneID: 139380875
NCBI-ProteinID: XP_070980116
LinkDB
Position
22:complement(38242779..38264159)
AA seq 1328 aa
MAKIAKTHEDIEAQILEIQGMKAALVEEGGDQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAAAKRKRRWDQTAEKQDQSGTPSNAGTPKKMSSWDQADQAAE
QTPGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGH
TTPGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKS
RWDETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERN
RPLTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQI
NDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAAL
RQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILV
VIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVA
SALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVD
EQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPL
MDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFK
HFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIM
GNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTV
LWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGA
LKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWM
RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAI
AIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDA
LMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEG
LRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYL
RYELEYFL
NT seq 3987 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaaaacacacgaagacatcgaggcccagatcctggagatccagggc
atgaaagctgccctggtggaggagggaggagatcagggtgtgggcctggactctactgga
tactacgatcaggagatctacggtggcagcgatagccgcttcgctggatatgtcacctcc
atcgcggccaatgaacaggaggatgatgatgaggaggactcgtcaacgagtctacttgga
cagaagaaaccgggatatcacgctccggtggctatactcaatgcaataccacagtcagat
gaacagtacgacccgttcgccgaacaccggcccgctaagattgcagagcgtgaagacgag
tacaaggccagacgccgacagatgatcatctctccggagcgtcttgacccctttgcagac
gggggcaaaacgccggaccctaagctgcagtccaggtcgtacatggacgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagagaaggccaaaaca
ggagacctgaaggctgtcaatggctctgctgcctcccaggctgctgctgctgcggccgcc
gcaaagcgtaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaaccccc
agcaacgccggcacaccgaagaagatgtccagctgggaccaggccgatcaggctgctgag
cagaccccaggacatacccctggccacaccccctccaacagccgctgggacgagaccccc
ggaaggaacaagggcagtgagaccccaggggccacccccagctcccgaatgtgggacccc
acccctagccacaccccggctggagcagccacgccaggcagaggggacacaccgggacac
accacccctggacacgggggagccacaggcagcgtgcgcaaaaaccgatgggacgaaacc
cccaagacggagagggagacccctggtcatgggagtggttgggccgagaccccccgtaca
gacagaggagacgagtcagtgggagagacccccacccccggggccagtaaaaggaaatcc
cgttgggacgagacccccgccagccagatgggctcttccaccccactgatgacccctggg
aaaactcccatcggaacccctgccatgaatatggccactccttctccaggtcacctgatg
agcatgaccccagagcagctgcaggcctggcgttgggagagggagatagacgagaggaac
cgacctctcacagatgatgagctggatgccatgttcccagaaggatacaaggtccttccc
ccaccagcaggctacgtgcccatccgtaccccggcccggaagctatctgccacccccacc
cccatggggggcatgacgggcttccatatgcagcaggaggaccgttccatgaagcagatc
aacgaccagcccagtgggaacctgcccttcctcaaaccagacgacattcagtactttgac
aaactgcttgttgaggtggatgagtccactctgagcccagaggaacagaaggaacgtaag
atcatgaaactactgctgaagatcaagaacggaacacctcccatgagaaaggctgccctg
cgtcagatcacagacaaggcgagggagtttggagcaggacccctgttcaaccagatcctg
cccctgctcatgtctcctactctggaggaccaggagcgccacctgctggtcaaggtcata
gaccgcatcctctacaagctggacgacctggtccgcccatatgtacacaagatcctggtg
gtgattgagccgctgctgattgatgaagattactacgcccgagtggagggcagagagatc
atctctaacttggccaaggctgccggcctggccactatgatctccactatgagacctgat
attgacaacatggatgaatacgtcagaaatacaacagccagagctttcgctgtcgtagcg
tccgctctgggtatcccctccctcttgcccttcctcaaagctgtttgtaagagcaagaaa
tcttggcaggcccgccacacgggcatcaagattgtccagcagatcgcgatcctcatgggc
tgtgccatcctgccccacctgaggagtctggtggagatcatcgagcatggcctggtggat
gagcagcagaaggtgcggaccatcagtgccctggccatcgccgccctggcggaggctgcc
acgccttacggtattgagtcctttgactccgtactcaaacccctgtggaagggtatccga
cagcacagaggaaagggtctggctgcgttcctgaaggccattggctacctgatccctcta
atggatgctgagtacgctaactactacaccagagaggtcatgctgatcctcatcagagag
ttccagtcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgttgt
ggtactgacggtgtggaggccaactacatcaagacagagatcctgcctcccttcttcaag
cacttctggcagcacaggatggccctggacagacgcaactacagacagctggtggacacc
acagtggagctggccaataaggtgggagcagcagagatcatctctcgtattgtagatgac
ctgaaggacgaggcagagcagtacaggaagatggtgatggagaccatagagaagatcatg
gggaacctgggagctgctgacatcgaccacaagctggaggagcagctgatcgacggcatc
ctgtacgccttccaggaacagaccacagaggactctgtgatgctgaacgggtttggcacg
gtggtgaacgccctggggaagagggtgaagccctacctgcctcagatctgtggtacggtg
ctgtggcgtctcaacaacaagtctgccaaggtccgccagcaggctgctgatctcatctcc
cgcaccgccgtggttatgaagacctgccaggaggagaagctgatgggtcacctgggagtg
gtgttatatgagtatctaggagaagagtatcctgaagtactgggaagtatccttggtgct
ctcaaggccatcgtcaatgtcatcggtatgcacaagatgactccaccaatcaaagacctg
ctaccgcggctgacgccaatcctgaagaacagacatgagaaggtgcaggagaactgtatt
gacctggtgggcaggattgctgacaggggtgctgagtacgtgtcggccagggagtggatg
cgcatctgctttgagctgctggagctcctcaaggcccacaagaaggccatccgcagagcc
accgtcaacaccttcgggtacatcgccaaggctatcggaccccatgatgtgctggccaca
ctactcaacaacctgaaggttcaggagcgtcagaaccgagtgtgtaccaccgtagccatc
gccatcgtggctgagacctgttctcctttcaccgtgctccccgccctcatgaacgagtac
cgtgtgcctgagctcaacgtgcagaacggcgtgctcaagtccctgtccttcctgtttgag
tacatcggggagatgggcaaggactacatctatgctgtcacgcccctgctggaggacgca
ctgatggacagagacctggtccacagacagactgccagtgccgtggtgcagcacatgtcc
ctgggcgtctacggcttcggctgtgaggactcccttaaccacttgttgaactacgtgtgg
cccaacgtgtttgagacgtcgccccatgtaatccaggctgtcatgggggccctggagggc
ctcagggtggctatcggcccctgccgcatgctgcagtattgcctgcagggtctcttccac
ccagccaggaaggttcgagacgtctactggaagatctataactcgatctacatcggttcc
caggatgctctgatagctcactacccccacgtctacaacgatgagaagaacccttacctc
cgctatgagctggaatactttttgtga

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